Job Description P0ACD8 Confidence 100.00% Date Thu Jan 5 11:17:58 GMT 2012 Rank 7 Aligned Residues 480 % Identity 34% Template d1cc1l_ SCOP info HydB/Nqo4-like HydB/Nqo4-like Nickel-iron hydrogenase, large subunit Resolution 2.15

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		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	V	V	D	P	I	T	R	I	E	G	H	M	R	C	E	V	N	I	N	D	Q	N	V	I	T	N	A	V	S	C	G	T	M	F	R	G	L	E	I	I	L	Q	G	R	D	P	R	D	A	W	A	F	V	E	R	I	C	G	V	C	T	G	V	H	A	L	A	S	V	Y	A	I	E	D	A	I	G	I
Query Conservation
Alig confidence																								.
Template Conservation																								.
Template Sequence		K	I	S	I	D	P	L	T	R	V	E	G	H	L	K	I	E	V	E	V	K	D	.	G	K	V	V	D	A	K	C	S	G	G	M	F	R	G	F	E	Q	I	L	R	G	R	D	P	R	D	S	S	Q	I	V	Q	R	I	C	G	V	C	P	T	A	H	C	T	A	S	V	M	A	Q	D	D	A	F	G	V
Template Known Secondary structure						S	S			S	S	S	S										T	.	T																			T	T	T	S		G	G	G					G	G	G	G		S	S	S																	T
Template Predicted Secondary structure																								.
Template SS confidence
		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	P	D	N	A	N	I	I	R	N	I	M	L	A	T	L	W	C	H	D	H	L	V	H	F	Y	Q	L	A	G	M	D	W	I	D	V	L	D	A	L	K	A	D	P	R	K	T	S	E	L	A	Q	S	L	S	S	W	P	K	S	S	P	G	Y	F	F	D	V	Q	N	R	L	K	K	F	V	E	G	G
Query Conservation
Alig confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	T	T	N	G	R	I	T	R	N	L	I	F	G	A	N	Y	L	Q	S	H	I	L	H	F	Y	H	L	A	A	L	D	Y	V	K	G	P	D	V	S	P	F	V	P	R	Y	A	N	A	D	L	L	T	D	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																														T	T	G	G	G	T	S				S	S	T	T	S		S			T	T								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure																																																									.
Query SS confidence																																																									.
Query Sequence		Q	L	G	I	F	R	N	G	Y	W	G	H	P	Q	Y	K	L	P	P	E	A	N	L	M	G	F	A	H	Y	L	E	A	L	D	F	Q	R	E	I	V	K	I	H	A	V	F	G	G	K	N	P	H	P	N	W	.	I	V	G	G	M	P	C	A	I	N	I	D	E	S	G	A	V	G	A	V	N	M	E	R
Query Conservation																																																									.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																													.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	K	D	G	A	K	A	D	A	T	N	T	Y	G	L	N	Q	Y	L	K	A	L	E	I	R	R	I	C	H	E	M	V	A	M	F	G	G	R	M	P	H	V	Q	G	M	V	V	G	G	A	T	E	I	P	T	A	D	K	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.			S																																		S	S	S	S	S		S	S			T	T			S	S							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		257	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	N	L	V	Q	S	I	I	T	R	T	A	D	F	I	N	N	V	M	I	P	D	A	L	A	I	G	Q	F	N	K	P	W	S	E	I	G	T	G	L	S	D	K	C	V	L	S	Y	G	A	F	P	D	I	A	N	D	F	G	E	K	S	L	L	M	P	G	G	A	V	I	N	G	D	F	N	N	V	L	P
Query Conservation
Alig confidence																																											.	.																	.	.	.													.	.	.	.	.	.
Template Conservation																																											.	.																	.	.	.													.	.	.	.	.	.
Template Sequence		V	A	E	Y	A	A	R	F	K	E	V	Q	K	F	V	I	E	E	Y	L	P	L	I	Y	T	L	G	S	V	Y	T	D	L	F	E	T	G	I	G	W	K	.	.	N	V	I	A	F	G	V	F	P	E	D	D	D	Y	K	T	.	.	.	F	L	L	K	P	G	V	Y	I	D	G	K	.	.	.	.	.	.
Template Known Secondary structure																			T													G	G	G	G	S	S						.	.										S	S	T	T	S			.	.	.										T	T		.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.																	.	.	.													.	.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.				.	.	.	.	.	.	.	270	.	.	.	.
		337	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	V	D	P	Q	Q	V	Q	E	F	V	D	H	A	W	Y	R	Y	P	N	D	Q	V	G	R	H	P	F	D	G	I	T	D	P	W	Y	N	P	G	D	V	K	G	S	D	T	N	I	Q	Q	L	N	E	Q	E	R	Y	S	W	I	K	A	P	R	W	R	G	N	A	M	E	V	G	P	L	A	R	T
Query Conservation
Alig confidence																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	E	E	F	D	S	K	L	V	K	E	Y	V	G	H	S	F	F	D	H	S	A	P	G	.	G	L	H	Y	S	V	G	E	T	N	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	P	D	K	P	G	A	Y	S	F	V	K	A	P	R	Y	K	D	K	P	C	E	V	G	P	L	A	R	M
Template Known Secondary structure							G	G	G						T	T	B	T	B			S	S	S	S	.				G	G	G					B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T	T			B	S							T	T	B			B		S
Template Predicted Secondary structure																										.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.		.	300	.	.	.	.	.	.	.	.	.																310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.					.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence		L	I	A	Y	H	K	G	D	A	A	T	V	E	S	V	D	R	M	M	S	A	.	.	.	.	L	N	L	P	L	S	G	I	Q	S	T	L	G	R	I	L	C	R	A	H	E	A	Q	W	A	A	G	K	L	Q	Y	F	F	D	K	L	M	T	N	L	K	N	G	N	L	A	T	A	S	T	E	K	W	E	P
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																																					.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.
Template Sequence		W	V	Q	N	P	E	L	S	P	V	G	Q	K	L	L	K	E	L	Y	G	I	E	A	K	K	F	R	D	L	G	D	K	A	F	S	I	M	G	R	H	V	L	R	A	E	E	T	W	L	T	A	V	A	V	E	K	W	L	K	Q	V	.	.	.	.	.	.	.	.	.	.	Q	P	G	A	E	T	Y	V	K
Template Known Secondary structure							B																		S	B	G	G	G	G	G	G	G	G	S	S																											.	.	.	.	.	.	.	.	.	.		T	T				B
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		339	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.											400	.	.	.	.	.	.	.	.
		493	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	W	P	T	E	C	R	G	V	G	F	T	E	A	P	R	G	A	L	G	H	W	A	A	I	R	D	G	K	I	D	L	Y	Q	C	V	V	P	T	T	W	N	A	S	P	R	D	P	K	G	Q	I	G	A	Y	E	A	A	L	M	N	T	K	M	A	I	P	E	Q	P	L	E	I	L	R	T	L	H	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	E	I	P	D	A	A	E	G	T	G	F	T	E	A	P	R	G	A	L	L	H	Y	L	K	I	K	D	K	K	I	E	N	Y	Q	I	V	S	A	T	L	W	N	A	N	P	R	D	D	M	G	Q	R	G	P	I	E	E	A	L	I	G	V	P	V	P	D	I	K	N	P	V	N	V	G	R	L	V	R	S
Template Known Secondary structure						S	S										T	T											T	T										T					S					T	T											T	T		B		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.
		573	.	.	.	.	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	P	C	L	A	C	S	T	H
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		Y	D	P	L	.	G	C	A	V	H
Template Known Secondary structure		T				.
Template Predicted Secondary structure						.
Template SS confidence
		489	490	.	.		.	.	.	.	.