Job Description P0ACD8 Confidence 100.00% Date Thu Jan 5 11:17:58 GMT 2012 Rank 8 Aligned Residues 471 % Identity 35% Template c2wpnB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:periplasmic [nifese] hydrogenase, large subunit, PDBTitle: structure of the oxidised, as-isolated nifese hydrogenase2 from d. vulgaris hildenborough Resolution 2.04 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	L	V	V	D	P	I	T	R	I	E	G	H	M	R	C	E	V	N	I	N	D	Q	N	V	I	T	N	A	V	S	C	G	T	M	F	R	G	L	E	I	I	L	Q	G	R	D	P	R	D	A	W	A	F	V	E	R	I	C	G	V	C	T	G	V	H	A	L	A	S	V	Y	A	I	E	D	A	I	G
Query Conservation
Alig confidence																									.																																				.
Template Conservation																									.																																				.
Template Sequence		T	T	I	A	I	D	P	V	T	R	I	E	G	H	L	K	A	E	V	V	V	E	N	.	G	K	V	V	D	A	R	L	S	G	G	M	Y	R	G	F	E	T	I	L	R	G	R	D	P	R	D	A	S	Q	I	V	Q	R	I	.	G	V	C	P	T	A	H	S	T	A	S	V	L	A	L	D	E	A	F	G
Template Known Secondary structure							S	S			S	S	S	S										T	.	T																			T	T	T	S		G	G	G					G	G	G		.			S																	T
Template Predicted Secondary structure																									.																																				.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.		.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	K	V	P	D	N	A	N	I	I	R	N	I	M	L	A	T	L	W	C	H	D	H	L	V	H	F	Y	Q	L	A	G	M	D	W	I	D	V	L	D	A	L	K	A	D	P	R	K	T	S	E	L	A	Q	S	L	S	S	W	P	K	S	S	P	G	Y	F	F	D	V	Q	N	R	L	K	K	F	V	E	G
Query Conservation
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	K	V	P	N	N	G	R	I	T	R	N	L	I	F	G	A	N	Y	L	Q	S	H	I	L	H	F	Y	H	L	S	A	Q	D	F	V	Q	G	P	D	T	A	P	F	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure																															T	T	G	G	G	T	S				S	S	T	T	S		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																																										.
Query SS confidence																																																										.
Query Sequence		G	Q	L	G	I	F	R	N	G	Y	W	G	H	P	Q	Y	K	L	P	P	E	A	N	L	M	G	F	A	H	Y	L	E	A	L	D	F	Q	R	E	I	V	K	I	H	A	V	F	G	G	K	N	P	H	P	N	W	.	I	V	G	G	M	P	C	A	I	N	I	D	E	S	G	A	V	G	A	V	N	M	E
Query Conservation																																																										.
Alig confidence		.	.	.	.	.	.	.	.	.																																																.														.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	R	F	P	K	S	D	L	R	L	S	K	E	L	N	K	A	G	V	D	Q	Y	I	E	A	L	E	V	R	R	I	C	H	E	M	V	A	L	F	G	G	R	M	P	H	V	Q	G	Q	V	V	G	G	A	T	E	I	P	T	K	E	K	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.			T	T																																				S	S	S	S	S		S	S			T	T			S	S							.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																																																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
											142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	N	L	V	Q	S	I	I	T	R	T	A	D	F	I	N	N	V	M	I	P	D	A	L	A	I	G	Q	F	N	K	P	W	S	E	I	G	T	G	L	S	D	K	C	V	L	S	Y	G	A	F	P	D	I	A	N	D	F	G	E	K	S	L	L	M	P	G	G	A	V	I	N	G	D	F	N	N	V	L
Query Conservation
Alig confidence		.																																										.	.																	.	.	.																.	.
Template Conservation		.																																										.	.																	.	.	.																.	.
Template Sequence		.	L	V	E	Y	A	A	R	F	K	K	V	R	D	F	V	E	Q	K	Y	V	P	V	V	Y	T	I	G	S	K	Y	K	D	M	F	K	V	G	Q	G	F	K	.	.	A	A	L	C	V	G	A	F	P	L	D	N	S	G	K	K	.	.	.	H	L	F	M	P	G	V	Y	A	K	G	K	D	M	P	.	.
Template Known Secondary structure		.																		T											T		G	G	G	G	S	S			T	T		.	.											S	T	T	S			.	.	.										T	T					.	.
Template Predicted Secondary structure		.																																										.	.																	.	.	.																.	.
Template SS confidence
			203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.				260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	V	D	L	V	D	P	Q	Q	V	Q	E	F	V	D	H	A	W	Y	R	Y	P	N	D	Q	V	G	R	H	P	F	D	G	I	T	D	P	W	Y	N	P	G	D	V	K	G	S	D	T	N	I	Q	Q	L	N	E	Q	E	R	Y	S	W	I	K	A	P	R	W	R	G	N	A	M	E	V	G	P	L	A	R
Query Conservation
Alig confidence		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	F	D	P	S	K	I	K	E	Y	V	K	Y	S	W	F	A	.	.	E	E	T	T	G	L	N	Y	K	E	G	K	T	I	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	P	D	K	A	G	A	Y	S	F	V	K	A	P	R	Y	D	G	L	S	L	E	V	G	P	L	A	R
Template Known Secondary structure		.	.	.	.			G	G	G						T	T	B	S	B		.	.	G	G	G	T	T	B		G	G	G					B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T	T		T	T			B	S	S						T	T	B			B		S
Template Predicted Secondary structure		.	.	.	.																	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.																.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.						.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence		T	L	I	A	Y	H	K	G	D	A	A	T	V	E	S	V	D	R	M	M	S	A	L	.	.	.	.	.	N	L	P	L	S	G	I	Q	S	T	L	G	R	I	L	C	R	A	H	E	A	Q	W	A	A	G	K	L	Q	Y	F	F	D	K	L	M	T	N	L	K	N	G	N	L	A	T	A	S	T	E	K	W
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.																																							.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Template Sequence		M	W	V	N	N	P	E	L	S	P	V	G	K	K	L	L	K	D	L	F	G	I	S	A	K	K	F	R	D	L	G	E	E	A	A	F	S	L	M	G	R	H	V	A	R	A	E	E	T	Y	Y	M	L	G	A	I	E	G	W	L	K	E	I	K	A	G	.	.	.	.	.	.	.	.	.	.	E	D	T	V
Template Known Secondary structure								B																		S	B	G	G	G	G						S	S																												T	T	.	.	.	.	.	.	.	.	.	.				B
Template Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.											400	.	.	.
		491	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570
Predicted Secondary structure
Query SS confidence
Query Sequence		E	P	A	T	W	P	T	E	C	R	G	V	G	F	T	E	A	P	R	G	A	L	G	H	W	A	A	I	R	D	G	K	I	D	L	Y	Q	C	V	V	P	T	T	W	N	A	S	P	R	D	P	K	G	Q	I	G	A	Y	E	A	A	L	M	N	T	K	M	A	I	P	E	Q	P	L	E	I	L	R	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	M	P	A	V	P	A	S	A	E	G	T	G	F	T	E	A	P	R	G	S	L	L	H	Y	V	K	V	K	D	S	K	I	D	N	Y	Q	I	V	S	A	S	L	W	N	C	N	P	R	D	D	M	G	Q	R	G	A	V	E	E	A	L	I	G	I	P	V	D	D	I	Q	N	P	V	N	V	A	R	L	I
Template Known Secondary structure								S	S										T	T											T	T															S					T	T										T	T	T		B		S		T	T	S
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		571	.	.	.	.	.	.	.	.	580	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	F	D	P	C	L	A	C	S	T	H
Query Conservation
Alig confidence								.
Template Conservation								.
Template Sequence		R	A	F	D	P	L	.	G	C	A	V	H
Template Known Secondary structure				T				.
Template Predicted Secondary structure								.
Template SS confidence
		484	.	.	.	.	.		490	.	.	.	.