Job Description Q57083 Confidence 100.00% Date Thu Jan 5 12:37:13 GMT 2012 Rank 7 Aligned Residues 278 % Identity 18% Template c3fzvC_ PDB info PDB header:transcription regulator Chain: C: PDB Molecule:probable transcriptional regulator; PDBTitle: crystal structure of pa01 protein, putative lysr family2 transcriptional regulator from pseudomonas aeruginosa Resolution 2.71 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	A	P	L	N	L	L	R	A	F	E	A	A	G	R	T	G	A	F	A	L	A	A	S	E	L	E	L	S	P	S	A	I	S	H	A	I	R	K	L	E	N	L	L	D	V	R	L	F	Q	R	S	T	R	E	I	T	L	T	K	E	G	E	I	L	L	E	H	I	Q	R	G	F	N	E	L	Q	Q	G
Query Conservation
Alig confidence																																																																														.	.	.	.
Template Conservation																																																																														.	.	.	.
Template Sequence		A	S	Y	T	L	R	Q	L	K	Y	F	V	T	T	V	E	C	G	S	V	A	E	A	S	R	K	L	Y	I	A	Q	P	S	I	S	T	A	V	K	G	L	E	E	S	F	G	V	Q	L	F	S	L	T	P	A	G	A	R	F	Y	R	K	A	Q	E	L	L	R	X	A	H	E	F	E	Q	N	.	.	.	.
Template Known Secondary structure																			S	S								T	T																		T	S																										T				.	.	.	.
Template Predicted Secondary structure																																																																														.	.	.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.				.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure																																																		.	.	.
Query SS confidence																																																		.	.	.
Query Sequence		L	A	L	V	T	A	D	E	S	R	P	L	R	L	H	T	A	P	S	F	A	H	Q	W	L	L	P	R	L	G	K	F	I	R	E	N	P	S	I	D	L	R	L	S	A	S	T	E	.	.	.	Y	A	R	F	E	Q	D	D	F	D	L	D	I	V	Y	G	E	P	R	P	S	P	Y	E	K	I	P	L	A
Query Conservation																																																		.	.	.
Alig confidence		.	.	.	.	.																																												.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	D	V	I	A	G	Q	I	D	I	G	C	F	E	T	V	A	P	L	Y	L	P	G	L	I	A	G	F	R	Q	A	Y	P	G	V	E	I	R	I	R	D	G	E	Q	Q	E	L	V	Q	G	L	T	S	G	R	F	D	L	A	F	L	Y	E	H	D	L	D	S	T	I	E	T	E	P	L	X
Template Known Secondary structure		.	.	.	.	.													T	T	T																	T	T																				T	S		S						S	S	S			T	T						S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180					.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.
Query SS confidence																					.	.	.	.
Query Sequence		V	E	E	L	T	P	L	C	S	P	Q	L	A	E	R	L	K	K	P	.	.	.	.	E	D	L	Y	A	L	T	L	I	Q	C	D	V	Q	L	Y	Q	W	K	G	W	F	E	A	N	K	M	T	P	P	N	N	Y	G	L	R	F	D	R	S	F	M	A	I	A	A	A	V	D	G	L	G	V	V	L	E	S
Query Conservation																					.	.	.	.
Alig confidence																					.	.	.	.
Template Conservation
Template Sequence		P	P	Q	R	P	H	A	L	L	P	E	G	H	R	F	A	G	Q	A	Q	V	S	L	R	D	L	C	L	E	P	X	I	L	L	D	V	Q	P	S	R	T	Y	F	V	S	L	F	E	E	L	G	L	T	P	N	I	A	F	S	S	P	S	I	E	X	V	R	G	X	V	G	Q	G	F	G	F	S	L	L	V
Template Known Secondary structure				B								T	T		T	T	T	T	S	S								T	T	S								T	T												T	T										S											T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	A	E	R	E	I	A	S	G	K	L	V	C	P	L	V	N	S	T	S	E	I	H	Y	I	G	H	Y	L	V	F	P	Q	H	Q	H	M	H	S	A	L	D	V	F	K	T	W	L	L	N	E	L	N
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		T	R	P	H	S	E	C	T	Y	D	G	K	K	V	V	X	.	V	D	L	A	E	P	V	S	T	S	G	L	A	A	A	W	L	K	R	A	Q	L	T	K	P	A	R	L	F	V	D	Y	C	R	E	Q	L	G
Template Known Secondary structure					S			B		T	T	S		B				.				S	S				B									S	S	S																	T
Template Predicted Secondary structure																		.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions