Job Description P0AF18 Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012 Rank 31 Aligned Residues 353 % Identity 18% Template c3v7pA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:amidohydrolase family protein; PDBTitle: crystal structure of amidohydrolase nis_0429 (target efi-500396) from2 nitratiruptor sp. sb155-2 Resolution 1.35 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.				40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																																									.	.	.																																					.	.
Query SS confidence																																									.	.	.																																					.	.
Query Sequence		M	Y	A	L	T	Q	G	R	I	F	T	G	H	E	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	V	A	E	L	P	P	.	.	.	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T	A	E	A	V	.	.
Query Conservation																																									.	.	.																																					.	.
Alig confidence																									.																.	.	.																																					.	.
Template Conservation																									.
Template Sequence		M	R	I	I	K	P	F	A	I	L	T	P	Q	T	I	I	Q	D	K	A	V	A	F	.	D	K	K	I	E	A	I	D	T	V	E	N	L	I	K	K	Y	P	N	A	A	V	E	H	D	E	N	S	L	L	L	P	G	F	A	N	P	H	L	H	L	E	F	S	A	N	K	A	T	L	Q	Y	G	D	F	I
Template Known Secondary structure													S	S	S				S						.	S	S	B															T	T	S																					G	G	G	T	T		S	S		S			S	S
Template Predicted Secondary structure																									.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
																			76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L	N	L	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	W	L	Y	S	V	I	R	H	R	E	D	L	L	P	L	C	D	G	A	C	L	E	Q	T	L	S	S	I	I	Q	T	G	T	T	A	I	G	A	I	S	S	Y	G	E	D	L	Q	A	C	I	D	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	V	V	Y	F	N	E	V	I
Template Known Secondary structure																		S															T	T									S	S	S	T	T							B	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.																	.	.	.	.	.	.	140	.	.	.
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure																																										.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.
Query Sequence		K	K	G	T	H	N	P	N	F	V	R	K	P	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	P	A	.	.	.	.	.	.	.	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I
Query Conservation																																										.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.																.
Template Conservation																																																																.
Template Sequence		G	S	N	A	A	T	A	D	V	M	Y	A	S	F	L	E	R	F	H	Q	S	K	K	H	E	N	E	R	F	K	A	A	V	A	I	H	S	P	Y	S	V	H	Y	I	L	A	K	R	A	L	D	I	A	K	K	Y	G	S	L	V	S	V	.	H	F	M	E	S	R	A	E	R	E	W	L	D	K	G	S	G
Template Known Secondary structure		B			G	G	G																	T	T		B	T	T										T	T	T	B																T						.			S		S										S		S
Template Predicted Secondary structure																																																																.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.		.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	A	T	H	L	Y	N	A	M	P	Y	I	T	G	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T
Query Conservation
Alig confidence																																		.	.	.	.	.																																											.
Template Conservation																																		.	.	.	.	.																																											.
Template Sequence		E	F	A	K	F	F	K	E	F	L	N	Q	T	R	P	V	N	D	T	K	S	F	L	E	L	F	K	E	L	H	T	L	.	.	.	.	.	F	V	H	M	V	W	A	N	E	E	E	I	Q	T	I	A	S	Y	N	A	H	I	I	H	C	P	I	S	N	R	L	L	G	N	G	V	L	D	L	E	K	I	.
Template Known Secondary structure											T				S		S	S								T	T	T	T	S				.	.	.	.	.					T	T												S														T	T						T	T	T	T	.
Template Predicted Secondary structure																																		.	.	.	.	.																																											.
Template SS confidence
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.						.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.						.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.
Query Sequence		I	Y	Y	R	N	G	L	C	V	D	E	N	G	T	L	S	G	S	S	L	T	M	I	E	G	V	R	N	L	V	E	.	.	.	.	.	H	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D
Query Conservation																																	.	.	.	.	.
Alig confidence		.	.																														.	.	.	.	.																										.	.
Template Conservation		.	.																																																												.	.
Template Sequence		.	.	K	S	I	P	Y	A	I	A	T	D	G	L	S	S	N	Y	S	L	N	M	Y	E	E	L	K	A	A	L	F	V	H	P	N	K	E	A	T	T	F	A	K	E	L	I	I	R	A	T	K	A	G	Y	D	A	L	G	F	E	G	.	.	G	E	I	A	V	G	K	D	A	D	M	Q	L	I	D	L	P
Template Known Secondary structure		.	.	T	T	S									T	T	S		S															S	T	T	S														T								T		S		.	.	S	S			T	T	S	B
Template Predicted Secondary structure		.	.																																																												.	.
Template SS confidence
				297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
																			367	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	I	T	K	T	I	V	N	G	N	E	V	V	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	G	L	T	N	V	E	D	L	Y	L	H	V	I	L	H	T	T	K	P	K	K	V	Y	I	Q	G	E	E	H	V	R
Template Known Secondary structure		T	T				G	G	G										S	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
		373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions