Job Description P0AF18 Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012 Rank 40 Aligned Residues 343 % Identity 21% Template c3hpaB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:amidohydrolase; PDBTitle: crystal structure of an amidohydrolase gi:44264246 from an2 evironmental sample of sargasso sea Resolution 2.20 Å

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		2	.	.	.	.	.	.	.	10				.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure											.	.	.			.																											.																																			.	.	.	.
Query SS confidence											.	.	.			.																											.																																			.	.	.	.
Query Sequence		Y	A	L	T	Q	G	R	I	F	.	.	.	T	G	.	H	E	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	V	A	E	L	P	.	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T	A	.	.	.	.
Query Conservation											.	.	.			.																											.																																			.	.	.	.
Alig confidence											.	.	.			.																											.																																			.	.	.	.
Template Conservation
Template Sequence		L	L	V	K	H	A	D	V	L	V	T	M	D	D	T	R	R	E	L	R	D	A	G	L	Y	I	E	D	N	R	I	V	A	V	G	P	S	A	E	L	P	E	T	A	D	E	V	L	D	L	R	G	H	L	V	I	P	G	L	V	N	T	H	H	H	M	Y	Q	S	L	T	R	A	V	P	A	A	Q	N	A
Template Known Secondary structure															T	T													T	T								G	G	G	S		S			S						T	T														G	G	G	G	G	S		S						T
Template Predicted Secondary structure
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
																			73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	A	V	S	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																											.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		E	L	F	G	W	L	T	N	L	Y	K	I	W	A	H	L	T	P	E	M	I	E	V	S	T	L	T	A	M	A	E	L	L	Q	S	G	C	T	T	S	S	D	H	L	Y	I	Y	P	N	G	S	R	L	D	D	S	I	G	A	A	Q	R	I	G	M	R	F	H	A	S	R	G	A	M	S	.	.	.	.	.
Template Known Secondary structure															T	T																			T	T	T								B					T	T														T												.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	L	V	K	K	G	T	H	N	P	N	F	V	R	K	P	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	P	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I	T	F	A	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	E	P	D	I	L	R	D	T	Q	R	L	I	E	T	Y	H	D	E	G	R	Y	A	M	L	R	V	V	V	A	P	C	S	P	F	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	R	D	L	M	R	D	A	A	V	L	A	R	E	Y	G	V	S	L	H	T
Template Known Secondary structure		.	.	.	.	.	.	.	.																			S	T	T		S								S		T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S																T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
										202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.																.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	L	Y	N	A	M	P	Y	I	T	G	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T	I	Y	Y	R
Query Conservation
Alig confidence													.	.																																				.	.	.																				.	.	.
Template Conservation													.	.																																				.	.	.																				.	.	.
Template Sequence		H	L	A	E	N	V	N	D	I	A	Y	.	.	T	P	A	E	Y	A	E	D	L	G	W	V	G	H	D	V	W	H	A	H	C	V	Q	L	D	D	A	G	I	G	L	F	A	R	T	.	.	.	G	T	G	V	A	H	C	P	C	S	N	M	R	L	A	S	G	I	A	.	.	.	P	V	K	K	M	R	L
Template Known Secondary structure				S		S					T		.	.								T	T	T			S	T	T							T	T													.	.	.	T													T	T					.	.	.
Template Predicted Secondary structure													.	.																																				.	.	.																				.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.				.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.				.	.	.	.	.	.	330
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.										.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.	.	.	.	.	.
Query Sequence		N	G	L	C	V	D	E	N	G	T	L	S	G	S	S	L	T	.	.	.	.	.	.	.	.	.	M	I	E	G	V	R	N	L	V	E	H	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D
Query Conservation																			.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.																																				.
Template Conservation																																																															.
Template Sequence		A	G	V	P	V	G	L	G	V	D	G	S	A	S	N	D	G	A	Q	M	V	A	E	V	R	Q	A	L	L	L	Q	R	V	G	F	G	P	D	A	M	T	A	R	E	A	L	E	I	A	T	L	G	G	A	K	V	L	N	R	D	D	.	I	G	A	L	K	P	G	M	A	A	D	F	A	A	F	D	L	R
Template Known Secondary structure			T										T	T	S	S																						T	T	S	S										T								T		S	S	.	S	S	S		S	T	T	S	B								T	T
Template Predicted Secondary structure																																																															.
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.
																						367	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	I	T	K	T	I	V	N	G	N	E	V	V	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	P	L	F	A	G	A	L	H	D	P	V	A	A	L	V	F	C	A	P	S	Q	T	A	Y	T	V	V	N	G	K	V	V	V	R
Template Known Secondary structure		S	G	G	G	T	T		T	T	S								S	S					S					T	T
Template Predicted Secondary structure
Template SS confidence
		417	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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