Phyre 2 alignment of P0AF18 with c2ubpC

Job Description P0AF18
Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012

Rank 51 Aligned Residues 356

% Identity 14% Template c2ubpC_

PDB info PDB header:hydrolase Chain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.													.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	A	L	T	Q	G	R	I	F	T	G	H	E	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	V	A	E	.	.	.	.	.	.	.	.	.	.	.	.	L	P	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																						.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.
Template Conservation														.																																																															.	.	.	.
Template Sequence	L	L	L	T	N	A	L	I	L	D	Y	T	G	.	I	Y	K	A	D	I	G	V	K	D	G	Y	I	V	G	I	G	K	G	G	N	P	D	I	M	D	G	V	T	P	N	M	I	V	G	T	A	T	E	V	I	A	A	E	G	K	I	V	T	A	G	G	I	D	T	H	V	H	F	I	N	P	.	.	.	.
Template Known Secondary structure											T	T		.										T	T									B		T	T	T		S	S			T	T		B			T	T							T	T																	T	.	.	.	.
Template Predicted Secondary structure														.																																																															.	.	.	.
Template SS confidence
	69	70	.	.	.	.	.	.	.	.	.	80	.		.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.

	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	T	A	E	A	V	S	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L	N	L	V	K	K	G	T	H	N	P	N	F	V	R
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	.	D	Q	V	D	V	A	L	A	N	G	I	T	T	L	F	G	G	G	T	G	P	A	E	G	S	.	.	.	.	.	.	.	.	K	A	T	T	V	T	P	G	P	W	N	I	E	K	M	L	K	S	T	E	G	L	P	I	N	V	G	I	L	G	K	G	H	G	S
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	T								T	T									S	S	S					.	.	.	.	.	.	.	.			S	S																T	T		S	S					B						S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template SS confidence
													144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.									.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.

	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.
Query SS confidence																																														.	.	.
Query Sequence	K	P	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	P	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	.	.	.	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I	T	F	A	T	H	L	Y	N	A	M	P	Y	I	T	G
Query Conservation																																														.	.	.
Alig confidence																																														.	.	.
Template Conservation
Template Sequence	S	I	A	P	I	M	E	Q	I	D	A	G	A	A	G	L	I	H	E	D	W	G	A	T	P	A	S	I	D	R	S	L	T	V	A	D	E	A	D	V	Q	V	A	I	H	S	D	T	L	N	E	A	G	F	L	E	D	T	L	R	A	I	N	G	R	V	I	H	S	F	H	V	E	G	A	G	G	G	H	A
Template Known Secondary structure	S	S									T	T			B			B	G	G	G																		T		B				B			T	T		S	S											T	T						T	T	T	T	S	T	T	S		S	T
Template Predicted Secondary structure
Template SS confidence
	204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T	I	Y	Y	R	N	G	L	C	V	D	E	N	G	T	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	P	D	I	M	A	M	A	G	H	P	N	V	L	P	S	S	T	N	P	T	R	P	F	T	V	N	T	I	D	E	H	L	D	M	L	M	V	C	H	H	L	K	Q	N	I	P	E	D	V	A	F	A	D	S	R	I	R	P	E	T	I	A	A	E	D	I	L	H	D	L	G	I	I	S	M	M	S	T	D	A
Template Known Secondary structure	T	T	G	G	G	G	G	G		T	T				B			S	T	T	S	S		B	T	T													T	T			T	T	S											S														T	T	S	S		B					B
Template Predicted Secondary structure
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

	307	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.																		.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Query Sequence	S	G	S	S	L	T	M	I	E	G	V	R	N	L	V	E	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D	F	.	.
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																													.	.
Template Conservation
Template Sequence	L	A	M	G	R	A	G	E	M	V	L	R	T	W	Q	T	A	D	K	M	K	K	Q	R	G	P	L	A	E	E	K	N	G	S	D	N	F	R	L	K	R	Y	V	S	K	Y	T	I	N	P	A	I	A	Q	G	I	A	H	E	V	G	S	I	E	E	G	K	F	A	D	L	V	L	W	E	P	K	F	F	G
Template Known Secondary structure	T	T	S	S		T	T																			S		T	T			S	S														T								T		T	T	T	S	S	S			T	T	S	B								G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
	365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	K	I	T	K	T	I	V	N	G	N	E	V	V	T	Q
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	V	K	A	D	R	V	I	K	G	G	I	I	A	Y	A	Q
Template Known Secondary structure	T	S		S					T	T
Template Predicted Secondary structure
Template SS confidence
	445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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