Phyre 2 alignment of P0AF18 with c2qs8A

Job Description P0AF18
Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012

Rank 38 Aligned Residues 362

% Identity 15% Template c2qs8A_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:xaa-pro dipeptidase; PDBTitle: crystal structure of a xaa-pro dipeptidase with bound2 methionine in the active site

Resolution 2.33 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.			.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																					.
Query SS confidence															.	.																					.
Query Sequence	M	Y	A	L	T	Q	G	R	I	F	T	G	H	E	.	.	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	V	.	A	E	L	P	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T	A	E	A	V	S	V
Query Conservation															.	.																					.
Alig confidence															.	.																					.
Template Conservation
Template Sequence	K	T	L	I	H	A	G	K	L	I	D	G	K	S	D	Q	V	Q	S	R	I	S	I	V	I	D	G	N	I	I	S	D	I	K	K	G	F	I	S	S	N	D	F	E	D	Y	I	D	L	R	D	H	T	V	L	P	G	L	X	D	X	H	V	H	F	G	Q	E	Y	Q	S	K	A	Q	A	P	I	K	V	E
Template Known Secondary structure												S	S		S	S											T	T								S					T	T	S	S																					T	T						T	T	T	S		S
Template Predicted Secondary structure
Template SS confidence
	8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.

	78	.						80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure			.	.	.	.	.																																																																				.	.	.	.	.	.
Query SS confidence			.	.	.	.	.																																																																				.	.	.	.	.	.
Query Sequence	E	T	.	.	.	.	.	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L	N	L	V	K	K	G	T	H	N	P	N	.	.	.	.	.	.
Query Conservation			.	.	.	.	.																																																																				.	.	.	.	.	.
Alig confidence			.	.	.	.	.																																																																				.	.	.	.	.	.
Template Conservation
Template Sequence	R	E	X	Q	A	I	L	A	T	Q	H	A	Y	V	T	F	K	S	G	F	T	T	V	R	Q	V	G	D	S	G	L	V	A	I	S	L	R	D	A	I	N	S	G	K	L	A	G	P	R	I	F	A	A	G	K	T	I	A	T	T	G	G	H	A	D	P	T	N	G	K	A	V	D	D	Y	D	Y	P	V	P
Template Known Secondary structure																		T	T										S	S	S											T	T	S	S										S		B			T	T		T	T		T	T	T	T			G	G	G						G
Template Predicted Secondary structure
Template SS confidence
	88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.

							147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.															.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	F	V	R	K	P	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	M	V	P	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	H	S	N	A	T	L	K	E	A	K	A	G
Query Conservation	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.
Template Conservation																																																																					.	.
Template Sequence	E	Q	G	V	V	N	G	P	Y	E	V	Y	A	A	V	R	Q	R	Y	K	D	G	A	D	G	I	K	I	T	V	T	G	G	V	L	S	V	A	K	S	G	Q	N	P	Q	F	T	Q	E	E	V	D	A	V	V	S	A	A	K	D	Y	G	X	W	V	A	V	H	.	.	A	H	G	A	E	G	X	K	R	A
Template Known Secondary structure	G	G	T				S															T		S							B			S	S	S	S	S	S		S	S		B		S															T	T							.	.			S
Template Predicted Secondary structure																																																																					.	.
Template SS confidence
	168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240	.	.	.	.	.

	207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	R	A	G	I	T	F	A	T	H	L	Y	N	A	M	P	Y	I	T	G	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	I	K	A	G	V	D	S	I	E	H	G	T	F	X	D	L	E	A	X	D	L	X	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	E	N	G	T	Y	Y	V	P	T	I	S	A	G	E	F	V	A	E	K	S	K	I	D	N	F	F	P	E	I	V	R	P	K	A	A	S	V	G	P	Q	I
Template Known Secondary structure				T		S						T	T										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T																	T	T	S	T	T	S	S		T	T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	287	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	A	G	K	T	I	Y	Y	R	N	G	L	C	V	D	E	N	G	T	L	S	G	S	S	L	T	M	I	E	G	V	R	N	L	V	E	H	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence	S	D	T	F	R	K	A	Y	E	K	G	V	K	I	A	F	G	T	D	A	G	V	Q	K	H	G	T	N	W	K	E	F	V	Y	X	V	E	N	G	X	P	A	X	K	A	I	Q	S	A	T	X	E	T	A	K	L	L	R	I	E	D	K	L	G	S	I	E	S	G	K	L	A	D	L	I	A	V	K	G	N
Template Known Secondary structure											T			B						B	T	T	B		T	T		T	T									T	T										T	T							T	T		T	T	T	S	S	S			T	T	S	B							S	S
Template Predicted Secondary structure
Template SS confidence
	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

									367	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	F	K	I	T	K	T	I	V	N	G	N	E	V	V	T
Query Conservation	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.												.
Template Conservation																				.
Template Sequence	P	I	E	D	I	S	V	L	E	N	V	D	V	V	I	K	D	G	L	.	L	Y	E
Template Known Secondary structure	T	T	T		G	G	G	G	G	G							T	T		.
Template Predicted Secondary structure																				.
Template SS confidence
	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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