Job Description P0AF18 Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012 Rank 20 Aligned Residues 338 % Identity 12% Template c2pajA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative cytosine/guanine deaminase; PDBTitle: crystal structure of an amidohydrolase from an environmental sample of2 sargasso sea Resolution 2.70 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.									.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.
Query Sequence		Y	A	L	T	Q	G	R	I	F	T	G	H	E	.	.	.	.	.	.	.	.	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	V	A	E	L	P	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T	A	E
Query Conservation															.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																							.
Template Conservation																																													.
Template Sequence		T	L	I	R	N	A	A	A	I	M	T	G	G	R	G	T	A	D	D	P	S	R	V	P	G	P	D	I	R	I	V	G	D	T	I	D	A	I	G	A	L	A	P	.	R	P	G	E	T	I	V	D	A	T	D	C	V	I	Y	P	A	W	V	N	T	H	H	H	L	F	Q	S	L	L	K	G	E	P	F	R
Template Known Secondary structure							B	S			B					S	S	S	S	S		S	B										T	T						S	S				.		T	T							B	T														G	G	G	G	G			S				G
Template Predicted Secondary structure																																													.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
		74	.	.						.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130							.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure					.	.	.	.	.																																																							.	.	.	.	.	.
Query SS confidence					.	.	.	.	.																																																							.	.	.	.	.	.
Query Sequence		A	V	S	.	.	.	.	.	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	.	.	.	.	.	.	E	G	P	W	L	N	L	V	K	K	G	T
Query Conservation					.	.	.	.	.																																																							.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																																							.	.	.	.	.	.
Template Conservation
Template Sequence		A	L	F	D	E	R	R	F	R	L	A	A	R	I	G	L	I	E	L	A	R	S	G	C	A	T	V	A	D	H	N	Y	V	Y	Y	P	G	M	P	F	D	S	S	A	I	L	F	E	E	A	E	K	L	G	L	R	F	V	L	L	R	G	G	A	T	Q	T	R	Q	L	E	A	D	L	P	T	A	L	R	P
Template Known Secondary structure		G	G																			T	T	T													T	T		S	S													T	T											S				S		S	T	T	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.										.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.
Query Sequence		H	N	P	N	F	V	R	K	P	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	P	.	.	.	.	.	.	.	.	.	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I	T	F
Query Conservation																																					.	.	.	.	.	.	.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	T	L	D	A	Y	V	A	D	I	E	R	L	A	A	R	Y	H	D	A	S	P	R	A	M	R	R	V	V	M	A	P	T	T	V	L	Y	S	I	S	P	R	E	M	R	E	T	A	A	V	A	R	R	L	G	L	R	M	H	S	H	L	S	G	K	S	P	V	A	F	C	G	E	H	D	W	L	G	S	D
Template Known Secondary structure																		T				S	T	T		S								T	T	T	T	T	S	S															T	T																			T	T			S	T	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	H	L	Y	N	A	M	P	Y	I	T	G	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T	I	Y
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.
Template Sequence		V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Y	A	H	L	V	K	V	D	A	D	E	I	A	L	L	A	Q	T	.	.	.	G	T	G	V	A	H	C	P	Q	S	N	G	R	L	P	.	.	.	.	.	.	.	.	V	R	E	M
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S			S													.	.	.	T															.	.	.	.	.	.	.	.		T	T
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.																.	.	.	.	.	.	.	.
Template SS confidence
		281																															.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300				.	.	.	.	.	.	.	.	.	310	.	.	.	.	.									.	.	.	.
		294	.	.	.	.	.	300	.	.	.	.	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.																																																														.	.
Query SS confidence														.	.	.	.	.																																																														.	.
Query Sequence		Y	R	N	G	L	C	V	D	E	N	G	T	.	.	.	.	.	L	S	G	S	S	L	T	M	I	E	G	V	R	N	L	V	E	H	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D	.	.
Query Conservation														.	.	.	.	.																																																														.	.
Alig confidence														.	.	.	.	.																																									.																					.	.
Template Conservation																																																											.
Template Sequence		A	D	A	G	V	P	V	S	I	G	V	D	G	A	A	S	N	E	A	A	D	M	I	S	E	V	H	M	T	W	L	A	Q	R	A	R	L	A	S	I	A	E	V	I	H	W	G	T	A	G	G	A	R	V	M	G	L	.	D	E	V	G	K	V	A	V	G	Y	A	A	D	I	A	V	Y	R	L	D	D	P
Template Known Secondary structure					T														S			S															T												T								T		.	T	T	S	S			S	T	T	S	B										S	G
Template Predicted Secondary structure																																																											.
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.		.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
																				367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	K	I	T	K	T	I	V	N	G	N	E	V	V	T	Q
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	Y	F	G	L	H	D	P	A	I	G	P	V	A	S	G	G	R	P	S	V	M	A	L	F	S	A	G	K	R	V	V	V	D
Template Known Secondary structure		G	G	T	T		S	S	G	G	G					S		S										T	T						T
Template Predicted Secondary structure
Template SS confidence
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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