Job Description P0AF18 Confidence 100.00% Date Wed Jan 25 15:20:32 GMT 2012 Rank 30 Aligned Residues 358 % Identity 19% Template c2p9bA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:possible prolidase; PDBTitle: crystal structure of putative prolidase from2 bifidobacterium longum Resolution 1.70 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.				.	.	.	.	.	20	.	.	.		.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure															.	.	.										.											.	.
Query SS confidence															.	.	.										.											.	.
Query Sequence		Y	A	L	T	Q	G	R	I	F	T	G	H	E	.	.	.	F	L	D	D	H	A	V	V	I	.	A	D	G	L	I	K	S	V	C	P	.	.	V	A	E	L	P	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T	A	E	A	V
Query Conservation															.	.	.										.											.	.
Alig confidence															.	.	.										.											.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	L	A	H	A	T	I	V	T	G	D	K	A	G	T	I	L	R	N	X	T	I	V	V	G	A	D	G	R	I	E	Q	V	A	P	S	I	E	T	S	I	P	A	E	Y	H	Y	L	D	G	T	G	K	I	V	X	P	G	L	I	N	A	H	T	H	L	.	.	.	.	.	.	.	.	.	.	F	S	Y
Template Known Secondary structure														T	T													T	T	S	B							G	G	G					T	T							T	T														S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80											.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L	N	L	V	K	K	G	T	H	N	P	N	F	V	R	K	P	D	A	A	L
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		X	A	A	T	V	K	H	N	A	T	T	L	L	E	S	G	V	T	T	I	R	T	L	G	D	V	G	Y	E	V	V	T	L	R	D	Q	I	.	D	A	G	Q	I	L	G	P	R	I	L	A	S	G	P	L	X	A	I	P	E	G	H	G	A	P	L	I	A	L	T	S	G	T	P	E	E	A	R	T	A	V
Template Known Secondary structure																T	T							S			S	S	S										.		T	T	S	S										S							S	S									S
Template Predicted Secondary structure																																							.
Template SS confidence
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.		150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.											.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.
Query Sequence		V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	.	.	.	.	.	.	.	.	.	.	P	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I	T	F	A	T	H	L	Y	N	A	M	P	Y	I	T
Query Conservation																							.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation																																																			.	.
Template Sequence		A	Q	N	L	K	A	G	V	N	A	I	K	I	A	A	T	G	G	V	T	D	A	Q	E	I	Q	X	S	V	E	Q	X	R	A	I	C	D	E	A	H	Q	Y	G	V	I	V	G	A	H	.	.	A	Q	S	P	E	G	V	R	R	S	L	L	A	G	V	D	T	I	E	H	G	S	V	L	D	D	E	L	I
Template Known Secondary structure							T	T		S							S			T	T	S																					T	T							.	.			S											T		S
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	E	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T	I	Y	Y	R	N	G	L	C	V	D	E	N	G	T
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.
Template Sequence		G	X	F	R	H	N	P	N	A	L	R	.	.	.	.	.	.	.	.	.	.	G	Y	S	A	L	I	P	T	L	S	A	G	L	P	L	T	L	L	G	Q	D	V	T	G	I	T	D	I	Q	L	E	N	S	K	N	V	V	G	G	X	V	S	G	A	R	Q	A	H	E	A	G	L	X	I	G	V	G	T	D
Template Known Secondary structure								T	T	S	T	T	.	.	.	.	.	.	.	.	.	.	S																	S																																T	T			B
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		276	.	.	.	280	.	.	.	.	.	.											.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
					306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.									.	.	370	.	.	.	.
Predicted Secondary structure		.	.	.																																																															.	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																															.	.	.	.	.	.	.	.
Query Sequence		.	.	.	L	S	G	S	S	L	T	M	I	E	G	V	R	N	L	V	E	H	C	G	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D	F	.	.	.	.	.	.	.	.	K	I	T	K	T	I	V
Query Conservation		.	.	.																																																															.	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																															.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	G	X	T	F	V	P	Q	Y	A	T	W	R	E	L	E	L	L	V	A	Y	A	G	F	S	P	A	E	A	L	H	A	A	T	A	V	N	A	S	I	L	G	V	D	A	E	T	G	S	L	E	V	G	K	S	A	D	L	L	V	L	N	A	N	P	L	D	D	L	R	A	L	E	H	P	A	L	V	I	A
Template Known Secondary structure		T	T	S	T	T	S		T	T																									T							T	T		T	T	T	S	S	S			T	T	S	B							S	S		T	T	T		G	G	G	G	T	S		S
Template Predicted Secondary structure
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		375	.	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	N	E	V	V	T	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	H	P	V	W	R	P
Template Known Secondary structure		T	T					S
Template Predicted Secondary structure
Template SS confidence
		426	.	.	.	430	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions