Phyre 2 alignment of P0AF18 with c1fwcC

Job Description P0AF18
Confidence 99.98% Date Wed Jan 25 15:20:32 GMT 2012

Rank 53 Aligned Residues 354

% Identity 16% Template c1fwcC_

PDB info PDB header:hydrolase Chain: C: PDB Molecule:urease; PDBTitle: klebsiella aerogenes urease, c319a variant at ph 8.5

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.											.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																	.	.	.	.	.	.	.	.	.	.
Query Sequence	Y	A	L	T	Q	G	R	I	F	T	G	H	E	F	L	D	D	H	A	V	V	I	A	D	G	L	I	K	S	V	C	P	.	.	.	.	.	.	.	.	.	.	V	A	E	L	P	P	E	I	E	Q	R	S	L	N	G	A	I	L	S	P	G	F	I	D	V	Q	L	N	G	C	G	G	V	Q	F	N	D	T
Query Conservation																																	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																			.	.	.	.	.	.	.	.	.	.																																	.	.	.	.	.	.
Template Conservation														.																																																													.	.	.	.	.	.
Template Sequence	L	V	L	T	N	A	L	I	V	D	H	W	G	.	I	V	K	A	D	I	G	V	K	D	G	R	I	F	A	I	G	K	A	G	N	P	D	I	Q	P	N	V	T	I	P	I	G	A	A	T	E	V	I	A	A	E	G	K	I	V	T	A	G	G	I	D	T	H	I	H	W	I	C	P	.	.	.	.	.	.
Template Known Secondary structure											T	T		.										T	T											T	T	T		S	S							T	T							T	T															S		T	.	.	.	.	.	.
Template Predicted Secondary structure														.																																																													.	.	.	.	.	.
Template SS confidence
	68	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140

	72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	E	A	V	S	V	E	T	L	E	I	M	Q	K	A	N	E	K	S	G	C	T	N	Y	L	P	T	L	I	T	T	S	D	E	L	M	K	Q	G	V	R	V	M	R	E	Y	L	A	K	H	P	N	Q	A	L	G	L	H	L	E	G	P	W	L	N	L	V	K	K	G	T	H	N	P	N	F	V	R	K	P
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	Q	Q	A	E	E	A	L	V	S	G	V	T	T	M	V	G	G	G	T	G	P	A	A	.	.	.	.	.	.	.	.	G	T	H	A	T	T	C	T	P	G	P	W	Y	I	S	R	M	L	Q	A	A	D	S	L	P	V	N	I	G	L	L	G	K	G	N	V	S	Q	P
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.										T										S	S			.	.	.	.	.	.	.	.																						T	T	S	S	S					B						S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.
Template SS confidence
											141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.									.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

	152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.				.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																												.	.	.
Query SS confidence																																												.	.	.
Query Sequence	D	A	A	L	V	D	F	L	C	E	N	A	D	V	I	T	K	V	T	L	A	P	E	M	V	P	A	E	V	I	S	K	L	A	N	A	G	I	V	V	S	A	G	.	.	.	H	S	N	A	T	L	K	E	A	K	A	G	F	R	A	G	I	T	F	A	T	H	L	Y	N	A	M	P	Y	I	T	G	R	E
Query Conservation																																												.	.	.
Alig confidence																																												.	.	.
Template Conservation
Template Sequence	D	A	L	R	E	Q	V	A	A	G	V	I	G	L	I	H	E	D	W	G	A	T	P	A	A	I	D	C	A	L	T	V	A	D	E	M	D	I	Q	V	A	L	H	S	D	T	L	N	E	S	G	F	V	E	D	T	L	A	A	I	G	G	R	T	I	H	T	F	H	T	E	G	A	G	G	G	H	A	P	D
Template Known Secondary structure										T		S	B			B	G	G	G																		T		B				B			T	T		S	S											T	T						T	T	T	T	S	T	T	S	S	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.

	229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	G	L	A	G	A	I	L	D	E	A	D	I	Y	C	G	I	I	A	D	G	L	H	V	D	Y	A	N	I	R	N	A	K	R	L	K	G	D	K	L	C	L	V	T	D	A	T	A	P	A	G	A	N	I	E	Q	F	I	F	A	G	K	T	I	Y	Y	R	N	G	L	C	V	D	E	N	G	T	L	S	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	I	I	T	A	C	A	H	P	N	I	L	P	S	S	T	N	P	T	L	P	Y	T	L	N	T	I	D	E	H	L	D	M	L	M	V	A	H	H	L	D	P	D	I	A	E	D	V	A	F	A	E	S	R	I	R	R	E	T	I	A	A	E	D	V	L	H	D	L	G	A	F	S	L	T	S	S	D	S	Q	A
Template Known Secondary structure	G	G	G	G	G	G	S	T	T							S	T	T	S	S		B	T	T														T			T	T	S									T	T															T	T	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
	284	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.

	309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.																		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.				.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Query Sequence	S	S	L	T	M	I	E	G	V	R	N	L	V	E	H	C	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	A	L	D	E	V	L	R	M	A	T	L	Y	P	A	R	A	I	G	V	E	K	R	L	G	T	L	A	A	G	K	V	A	N	L	T	A	F	T	P	D	F	.	.	.	K
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																											.	.	.
Template Conservation
Template Sequence	M	G	R	V	G	E	V	I	L	R	T	W	Q	V	A	H	R	M	K	V	Q	R	G	A	L	A	E	E	T	G	D	N	D	N	F	R	V	K	R	Y	I	A	K	Y	T	I	N	P	A	L	T	H	G	I	A	H	E	V	G	S	I	E	V	G	K	L	A	D	L	V	V	W	S	P	A	F	F	G	V	K
Template Known Secondary structure	S	S		T	T																			S		T	T			S	S	S											T	T	T							T	T		T	T	T	S	S	S	S		T	T	S	B								G	G	G	T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	364	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

	369	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure
Query SS confidence
Query Sequence	I	T	K	T	I	V	N	G	N	E	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence	P	A	T	V	I	K	G	G	M	I	A	I
Template Known Secondary structure		S					T	T
Template Predicted Secondary structure
Template SS confidence
	444	.	.	.	.	.	450	.	.	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions