Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 19 Aligned Residues 439 % Identity 15% Template c3l8cA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine--poly(phosphoribitol) ligase subunit 1; PDBTitle: structure of probable d-alanine--poly(phosphoribitol) ligase2 subunit-1 from streptococcus pyogenes Resolution 2.41 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C	G	A	R	V	L	P
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		D	M	I	D	.	S	I	E	Q	F	A	Q	T	Q	A	D	F	P	V	Y	D	C	L	G	E	R	R	T	Y	G	Q	L	K	R	D	S	D	S	I	A	A	F	I	D	S	L	A	L	L	A	K	S	P	V	L	V	F	G	A	Q	T	Y	D	M	L	A	T	F	V	A	L	T	K	S	G	H	A	Y	I	P
Template Known Secondary structure						.									S	T	T	S						T	T																						T				T	T									S	S													T	T
Template Predicted Secondary structure						.
Template SS confidence
		0	.	.	.		.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.										.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.
Query Sequence		V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	N	T	F	P	A	.	.	.	.	.	.	.	.	.	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A
Query Conservation																																			.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	D	V	H	S	A	P	E	R	I	L	A	I	I	E	I	A	K	P	S	L	I	I	A	I	E	E	F	P	L	T	I	E	G	I	S	L	V	S	L	S	E	I	E	S	A	K	L	A	E	M	P	Y	E	R	T	H	S	V	K	G	D	D	N	Y	Y	I	I	F	T	S	G	Q	P	K	G	V	Q	I	S
Template Known Secondary structure				T	T	S												S			S					S	S				S			T	T	S															T						S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210						.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.	.	.
Query SS confidence																																																												.	.	.	.	.
Query Sequence		V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	.	.	.	.	.	L	E	Q	M	L	A	G	C	T	H	A	S	L	V	P	T	Q
Query Conservation																																																												.	.	.	.	.
Alig confidence																																																												.	.	.	.	.
Template Conservation
Template Sequence		H	D	N	L	L	S	F	T	N	W	M	I	E	D	A	A	F	D	V	P	K	Q	P	Q	M	L	A	Q	P	P	Y	S	F	D	L	S	V	M	Y	W	A	P	T	L	A	L	G	G	T	L	F	A	L	P	K	E	L	V	A	D	F	K	Q	L	F	T	T	I	A	Q	L	P	V	G	I	W	T	S	T	P
Template Known Secondary structure																T	T	T				S	S							S		T	T	S	G	G	G										T	T								G	G	G	T	T												S			S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		228	.	230	.	.	.								.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																													.	.
Query SS confidence								.	.	.	.	.	.	.																													.	.
Query Sequence		L	W	R	L	L	V	.	.	.	.	.	.	.	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	Q	.	.	G	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E	A	D	G	L	A	D	V	G	S	P	L	P	G	R	E	V
Query Conservation								.	.	.	.	.	.	.																													.	.
Alig confidence								.	.	.	.	.	.	.																													.	.
Template Conservation
Template Sequence		S	F	A	D	M	A	M	L	S	D	D	F	C	Q	A	K	M	P	A	L	T	H	F	Y	F	D	G	E	E	L	T	V	S	T	A	R	K	L	F	E	R	F	P	S	A	K	I	I	N	A	Y	G	P	T	E	A	T	V	A	L	S	A	I	E	I	T	R	E	M	V	D	N	Y	T	R	L	P	I	G	Y
Template Known Secondary structure									T	S	T	T		S	T	T	T		T	T								S	S															T	T										G	G	G	S	S		S														S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		299	300																			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.						.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		K	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	.	.	.	.	.	V	N	D	E	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G	R	L	D	N	L	F
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		P	K	P	D	S	P	T	Y	I	I	D	E	D	G	K	E	L	S	S	G	E	Q	G	E	I	I	V	T	G	P	A	V	S	K	G	Y	L	N	N	P	E	K	T	A	E	A	F	F	T	F	K	G	Q	P	A	Y	H	T	G	D	I	G	S	L	T	E	D	N	I	L	L	Y	G	G	R	L	D	F	Q	I
Template Known Secondary structure				T	T	S							T	T	S		B			T	T									S	T	T	S		S		B	T	T													T	T														S	S	S								G	G	G	B
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.												.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	E	S	.	.	.	.	.	.	.	.	.	.	.	V	D	L	S	E	W	V	K	D	K	L	A	R	F	Q	Q	P	V	R	W
Query Conservation																																																			.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																								.	.																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.																								.	.
Template Sequence		.	.	.	.	.	K	I	E	L	E	D	V	S	Q	Q	L	N	Q	S	P	M	V	A	S	A	V	A	V	.	.	P	R	Y	N	K	E	H	K	L	L	A	Y	I	V	V	K	D	G	V	K	E	R	F	D	R	E	L	E	L	T	K	A	I	K	A	S	V	K	D	H	M	M	S	Y	M	M	P	S	K	F
Template Known Secondary structure		.	.	.	.	.			B										T	S	T	T								.	.				S	S	S											T	T	S	G	G	G		S	S												S	G	G	G	S		G	G	G	S		S
Template Predicted Secondary structure		.	.	.	.	.																								.	.
Template SS confidence
							402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.			.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	P	P	E	L	K	N	G	G	I	K	I	S	R	Q	A	L	K	E	W	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	R	D	S	L	P	L	T	P	N	G	K	I	D	I	K	T	L	I	N	E	V	N
Template Known Secondary structure					S	S			B		T	T	S	S	B									T
Template Predicted Secondary structure
Template SS confidence
		483	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.