Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 26 Aligned Residues 350 % Identity 23% Template c3ivrA_ PDB info PDB header:ligase Chain: A: PDB Molecule:putative long-chain-fatty-acid coa ligase; PDBTitle: crystal structure of putative long-chain-fatty-acid coa ligase from2 rhodopseudomonas palustris cga009 Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C	G	A	R	V	L
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		F	T	L	A	D	.	V	Y	R	R	N	A	A	L	F	P	D	R	T	A	F	M	V	D	G	V	R	L	T	H	R	D	Y	L	A	R	A	E	R	L	A	S	G	L	L	R	D	G	V	H	T	G	D	R	V	A	I	L	S	Q	N	C	S	E	M	I	E	L	I	G	A	V	A	L	I	G	A	I	L	L
Template Known Secondary structure							.									S	T	T	S						T	T																						T	T			T	T									S														T	T
Template Predicted Secondary structure							.
Template SS confidence
		7	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																					.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	V	N	Y	R	L	N	A	D	E	I	A	F	V	L	G	D	G	A	P	S	V	V	V	A	G	T	D	Y	R	D	I	V	A	G	V	L	P	S	L	G	G	V	K	K	A	Y	A	I	G	D	G	S	G	P	F	A	P	F	K	D	L	A	S	D	T	P	F	S	A	P	E	F	G	A	A	D	G	F	V
Template Known Secondary structure					T	T	S																					S	T	T								G	G	G		S	S							S	S				S	S				G	G	G	T				S									T	T	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure																																																																													.	.	.	.	.
Query SS confidence																																																																													.	.	.	.	.
Query Sequence		L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	L	E	Q	M	L	.	.	.	.	.
Query Conservation																																																																													.	.	.	.	.
Alig confidence																																																																													.	.	.	.	.
Template Conservation
Template Sequence		I	I	H	T	A	A	G	R	P	R	G	A	L	I	S	Q	G	N	L	L	I	A	Q	S	S	L	V	D	A	W	R	L	T	E	A	D	V	N	L	G	M	L	P	L	F	H	V	T	G	L	G	L	M	L	T	L	Q	Q	A	G	G	A	S	V	I	A	A	K	F	D	P	A	Q	A	A	R	D	I	E	A
Template Known Secondary structure																															T	T			T	T							S		T	T	S														T							S	S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.	.
Predicted Secondary structure																																															.	.																							.
Query SS confidence																																															.	.																							.
Query Sequence		A	G	C	T	H	A	S	L	V	P	T	Q	L	W	R	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	.	.	Q	G	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E	.	A	D	G	L	A	D	V	G	S	P
Query Conservation																																															.	.																							.
Alig confidence																																															.	.																							.
Template Conservation
Template Sequence		H	K	V	T	V	M	A	E	F	A	P	M	L	G	N	I	L	D	Q	A	A	P	A	Q	L	A	S	L	R	A	V	T	G	L	D	T	P	E	T	I	E	R	F	E	A	T	C	P	N	A	T	F	W	A	T	F	G	Q	S	E	T	S	G	L	S	T	F	A	P	Y	R	D	R	P	K	S	A	G	R	P
Template Known Secondary structure			T								T	T											G	G	G	G	T	T																					T	T										G	G	G	T								G	G	G	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		293	.	.	.	.	.	.	300	.	.												.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.																																								.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.																																								.
Query Sequence		L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	D	E	G	W	Y	A	T	R	D	R	G	E	M	H	.	N	G	K	L	T	I	V	G	R	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.																																								.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.																																								.
Template Conservation
Template Sequence		L	F	W	R	T	V	A	V	V	D	A	E	D	R	P	L	P	P	G	E	V	G	E	I	V	L	R	G	P	T	V	F	K	G	Y	W	N	N	A	A	A	T	Q	H	A	F	R	N	G	W	H	H	T	G	D	M	G	R	F	D	A	D	G	Y	L	F	Y	A	G	R	A
Template Known Secondary structure			T	T								T	T	S		B			T	T									S	T	T	S					T	T									T	G	G	G	S											T	T	S
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions