Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 9 Aligned Residues 446 % Identity 18% Template c3gqwB_ PDB info PDB header:ligase Chain: B: PDB Molecule:fatty acid amp ligase; PDBTitle: crystal structure of a fatty acid amp ligase from e. coli with an acyl2 adenylate product bound Resolution 3.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.				.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																										.	.	.
Query SS confidence																										.	.	.
Query Sequence		I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	.	.	.	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C	G	A	R
Query Conservation																										.	.	.
Alig confidence						.																				.	.	.
Template Conservation						.
Template Sequence		T	L	V	D	.	A	L	D	Y	A	A	L	S	S	A	G	X	N	F	Y	D	R	R	C	Q	L	E	D	Q	L	E	Y	Q	T	L	K	A	R	A	E	A	G	A	K	R	L	L	S	L	N	L	K	K	G	D	R	V	A	L	I	A	E	T	S	S	E	F	V	E	A	F	F	A	C	Q	Y	A	G	L	V
Template Known Secondary structure		S				.						T	T	S	S								T	T																									T	T	T			T	T									S	S													T	T
Template Predicted Secondary structure						.
Template SS confidence
		22	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.														.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	P	V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	N	T	F	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	V	P	L	A	I	P	S	W	S	A	K	L	Q	G	L	L	A	S	C	Q	P	A	A	I	I	T	G	D	E	W	L	P	L	V	N	A	A	T	H	D	N	P	E	L	H	V	L	S	H	A	W	F	K	A	L	P	E	A	D	V	A	L	Q	R	P	V	P	N	D	I	A	Y	L	Q	Y	T	S	G	S
Template Known Secondary structure																								S						S	T	T									T	T		S	S	S											S				S								T	T	S						G	G	G
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.			.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.								210	.	.	.	.	.	.
Predicted Secondary structure																													.	.																																						.	.	.	.	.	.	.
Query SS confidence																													.	.																																						.	.	.	.	.	.	.
Query Sequence		T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	.	.	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	.	.	.	.	.	.	.	P	L	E	Q	M	L	A
Query Conservation																													.	.																																						.	.	.	.	.	.	.
Alig confidence																													.	.																																						.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	F	P	R	G	V	I	I	T	H	R	E	V	X	A	N	L	R	A	I	S	H	D	G	I	K	L	R	P	G	D	R	C	V	S	W	L	P	F	Y	H	D	X	G	L	V	G	F	L	L	T	P	V	A	T	Q	L	S	V	D	Y	L	R	T	Q	D	F	A	X	R	P	L	Q	W	L	K	L	I	S
Template Known Secondary structure		S	S	S																					T	T	S				T	T									T	T	S								T					T	T	T														S	T
Template Predicted Secondary structure
Template SS confidence
		188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
		217	.	.	220	.	.	.	.	.	.	.	.											.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.								.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Query Sequence		G	C	T	H	A	S	L	V	P	T	Q	L	.	.	.	.	.	.	.	.	.	.	W	R	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	Q	G	I	.	.	.	.	.	.	.	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C
Query Conservation														.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	N	R	G	T	V	S	V	A	P	P	F	G	Y	E	L	C	Q	R	R	V	N	E	K	D	L	A	E	L	D	L	S	C	W	R	V	A	G	I	G	A	E	P	I	S	A	E	Q	L	H	Q	F	A	E	C	F	R	Q	V	N	F	D	N	K	T	F	X	P	C	Y	G	L	A	E	N	A	L	A	V	S
Template Known Secondary structure			T	T																	S							T	T				T	T								S	S																T	T	T			G	G	G								G	G	G	S	S		S
Template Predicted Secondary structure
Template SS confidence
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
		280	.	.	.	.	.	.	.	.	.																															290	.	.	.	.	.	.	.	.	.	300	.	.												.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	K	E	A	D	G	L	A	D	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	S	P	L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	S	D	E	A	S	G	V	V	V	N	E	V	D	R	D	I	L	E	Y	Q	G	K	A	V	A	P	G	A	E	T	R	A	V	S	T	F	V	N	C	G	K	A	L	P	E	H	G	I	E	I	R	N	E	A	G	X	P	V	A	E	R	V	V	G	H	I	C	I	S	G	P	S	L	X	S	G	Y	F	G
Template Known Secondary structure					T	T																	S	B						S	S									B						T	T								T	T	S		B			T	T	B								S	T	T					B	T	T
Template Predicted Secondary structure
Template SS confidence
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	G	Q	L	V	S	L	V	N	D	E	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M
Query Conservation
Alig confidence																																																																								.	.
Template Conservation																																																																								.	.
Template Sequence		D	Q	V	S	Q	D	E	I	A	A	T	G	W	L	D	T	G	D	L	G	Y	L	L	D	G	Y	L	Y	V	T	G	R	I	K	D	L	I	I	I	R	G	R	N	I	W	P	Q	D	I	E	Y	I	A	E	Q	E	P	E	I	H	S	G	D	A	I	A	F	V	T	A	.	.	Q	E	K	I	I	L	Q	I
Template Known Secondary structure													S												T	T								G	G	G					S	S														T	S	S	S			T	T	S							T	.	.	T	S
Template Predicted Secondary structure																																																																								.	.
Template SS confidence
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.			.	.	500	.	.	.	.	.
		399	400	.	.	.					.	.	.	.	.	.	410	.	.	.	.	.		.	.	.	.	420	.	.	.	.	.	.	.			.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure							.	.	.	.													.													.	.
Query SS confidence							.	.	.	.													.													.	.
Query Sequence		E	Y	D	H	E	.	.	.	.	S	V	D	L	S	E	W	V	K	D	K	L	.	A	R	F	Q	Q	P	V	R	W	L	T	L	.	.	P	P	E	L	K	N	G	G	I	K	I	S	R	Q	A	L	K	E	W	V	Q	R	Q
Query Conservation							.	.	.	.													.													.	.
Alig confidence							.	.	.	.													.													.	.
Template Conservation
Template Sequence		Q	C	R	I	S	D	E	E	R	R	G	Q	L	I	H	A	L	A	A	R	I	Q	S	E	F	G	V	T	A	A	I	D	L	L	P	P	H	S	I	P	R	T	S	S	G	K	P	A	R	A	E	A	K	K	R	Y	Q	K	A
Template Known Secondary structure																											S										T	T	S	S				T	T	S
Template Predicted Secondary structure
Template SS confidence
		506	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.