Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 24 Aligned Residues 406 % Identity 20% Template c3g7sA_ PDB info PDB header:ligase Chain: A: PDB Molecule:long-chain-fatty-acid--coa ligase (fadd-1); PDBTitle: crystal structure of a long-chain-fatty-acid-coa ligase2 (fadd1) from archaeoglobus fulgidus Resolution 2.15 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.									.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.
Query Sequence		M	I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	.	.	.	.	.	.	.	.	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L
Query Conservation																											.	.	.	.	.	.	.	.
Alig confidence							.																				.	.	.	.	.	.	.	.
Template Conservation							.
Template Sequence		I	S	L	A	D	.	R	I	D	A	A	A	E	K	F	G	E	K	T	A	I	I	S	A	E	P	K	F	P	S	E	F	P	E	S	X	N	F	L	E	I	C	E	V	T	K	K	L	A	S	G	I	S	R	K	G	V	R	K	G	E	H	V	G	V	C	I	P	N	S	I	D	Y	V	X	T	I	Y	A	L
Template Known Secondary structure				T	T		.										T	T	S							S	S					S	S		S																					T	T			T	T									S	S
Template Predicted Secondary structure							.
Template SS confidence
		17	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.																						.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	Q	C	G	A	R	V	L	P	V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W
Query Conservation																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	R	V	A	A	T	P	V	P	I	N	P	X	Y	K	S	F	E	L	E	H	I	L	N	D	S	E	A	T	T	L	V	V	H	S	X	L	Y	E	N	F	K	P	V	L	E	K	T	G	V	E	R	V	F	V	V	G	G	E	V	N	S	L	S	E	V	X	D	S	G	S	E	D	F	E	N	V	K	V	N
Template Known Secondary structure				T	T								T	T													T	T		S						G	G	G									T	T	S									T		S	S	S									S		S
Template Predicted Secondary structure
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		132	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	L
Query Conservation
Alig confidence																											.
Template Conservation																											.
Template Sequence		P	E	E	D	V	A	L	I	P	Y	T	G	G	T	T	G	P	K	G	V	X	L	T	H	F	.	N	L	A	A	N	A	L	Q	L	A	V	A	T	G	L	S	H	X	D	T	I	V	G	C	X	P	X	F	H	S	A	E	F	G	L	V	N	L	X	V	T	V	G	N	E	Y	V	V	X	G	X	F	N	Q
Template Known Secondary structure		T	T	T	S																						.																	T	T							S		T	T	S								T	T												S	S
Template Predicted Secondary structure																											.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		212	.	.	.	.	.	.	.	220	.	.	.	.	.	.													.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.									.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		E	Q	M	L	A	G	C	T	H	A	S	L	V	P	T	.	.	.	.	.	.	.	.	.	.	.	.	Q	L	W	R	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	Q	.	.	.	.	.	.	.	.	G	I	R	C	F	C	G	Y	G	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	X	L	A	E	N	I	E	K	Y	K	G	T	F	S	W	A	V	P	P	A	L	N	V	L	V	N	T	L	E	S	S	N	K	T	Y	D	W	S	Y	L	K	V	F	A	T	G	A	W	P	V	A	P	A	L	V	E	K	L	L	K	L	A	A	E	K	C	N	N	P	R	L	R	H	N	Q	I	W	G	X
Template Known Secondary structure											T	T																					S							T	T								S	S																		S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		272	.	.	.	.	.	.	.	280	.	.	.	.	.				.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.													.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.
Predicted Secondary structure																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query SS confidence																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Query Sequence		T	E	F	A	S	T	V	C	A	K	E	A	D	G	.	.	.	L	A	D	V	G	S	P	L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	.	.	.	.	.	D	E	G	W
Query Conservation																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Alig confidence																.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.
Template Conservation
Template Sequence		T	E	A	C	P	X	V	T	T	N	P	P	L	R	L	D	K	S	T	T	Q	G	V	P	X	S	D	I	E	L	K	V	I	S	L	E	D	G	R	E	L	G	V	G	E	S	G	E	I	V	I	R	G	P	N	I	F	K	G	Y	W	K	R	E	K	E	N	Q	E	C	W	W	Y	D	E	K	G	R	K	F
Template Known Secondary structure		G	G	G	S	S							G	G	G	G	G	G	T	T	S						T	T								S	S	S						T	T									S	T	T	S		S			T	T		T	T	G	G	G	T	S					T	T
Template Predicted Secondary structure
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.
		332	.	.	.	.	.	.	.	340		.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.
Predicted Secondary structure											.																																																															.	.	.	.	.	.
Query SS confidence											.																																																															.	.	.	.	.	.
Query Sequence		Y	A	T	R	D	R	G	E	M	.	H	N	G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	.	.	.	.	.	.	E	S
Query Conservation											.																																																															.	.	.	.	.	.
Alig confidence											.											.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.									.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template Sequence		F	R	T	G	D	V	G	F	I	D	E	E	G	F	L	H	F	Q	D	R	.	.	.	.	.	.	.	.	.	.	.	.	V	P	F	E	L	E	A	L	L	X	K	H	E	A	V	X	D	V	A	V	I	G	K	P	D	P	.	.	.	.	.	.	K	A	F	I	V	L	K	P	E	Y	R	G	K	V	D	E
Template Known Secondary structure												T	T	S								.	.	.	.	.	.	.	.	.	.	.	.										T	T	S	T	T													.	.	.	.	.	.								S	T	T	T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.	.	.
Template SS confidence
		416	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.													.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.							.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	S	E	W	V	K	D	K	L	A	R	F	Q	Q	P	V	R	W	L	T	L	P	P	E	L
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		E	D	I	I	E	W	V	R	E	R	I	.	.	.	.	.	S	R	E	V	E	F	V	E	E	L	P
Template Known Secondary structure										T	T		.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		496	.	.	.	500	.	.	.	.	.	.						.	.	.	510	.	.	.	.	.	.	.