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Job DescriptionP37353
Confidence100.00%DateThu Jan 5 11:55:31 GMT 2012
Rank11Aligned Residues444
% Identity21%Templatec3eynB_
PDB info PDB header:ligaseChain: B: PDB Molecule:acyl-coenzyme a synthetase acsm2a; PDBTitle: crystal structure of human acyl-coa synthetase medium-chain2 family member 2a (l64p mutation) in a complex with coa
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   6...10.........20..... ....30.........40..... ....50.........60.........70.........
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Query Sequence  WPWRHWRQVRGETIALRLND. . . . . EQLNWRELCARVDELASGFA. VQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARV
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Template Sequence  WADMEKAGKRPPSPALWWVNGKGKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVPEWWLVILGCIRAGLIF
Template Known Secondary structure  TTSS



SSS
TTT


TT


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TT
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   54.....60.........70.........80.........90.........100.........110.........120.........130...
 
   80.........90.........100.........110.........120.... .....130.......
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Query Sequence  LPVNPQLPQPLLEELLPNLTLQFALVPDGENTFPALTSLHIQLVE. . . . . . . . . . . . . . . . . . . . . . GAHAATWQPTRLC
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Template Sequence  MPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASECPSLRIKLLVSEKSCDGWLNFKKLLNEASTTHHCVETGSQ
Template Known Secondary structure 

TT

T
S
TTTGGG
TT


SSS

TT
S
S






BTT
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   134.....140.........150.........160.........170.........180.........190.........200.........210...
 
   138.140.........150.........160.........170.........180.........190.........200.........210 .
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Query Sequence  SMTLTSGSTGLPKAAVHTYQAHLASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQP. . . . . . L
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Template Sequence  EASAIYFTSGLPKMAEHSYSSLGLKAKMDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVI
Template Known Secondary structure  S





TTTTS

TT



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   214.....220.........230.........240.........250.........260.........270.........280.........290...
 
   212.......220.........230... ......240.........250.........260 .........270.........280....
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Query Sequence  EQMLAGCTHASLVPTQLWRLLV. . . . . . NRSSVSLKAVLLGGAAIPVELTEQARE. QGIRCFCGYGLTEFASTVCAKEAD
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Template Sequence  LKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMVSKTM
Template Known Secondary structure  S




TS
TTSS

TT


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S

TTT

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   297..300.........310.........320.........330.........340.........350.........360.........370......
 
   285... .290.........300.........310.........320.........330.........340. ....
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Query Sequence  GLAD. . . . . . . . . . . . . . . . . . VGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYATRDRGEMH. NGKL
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Template Sequence  KIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYF
Template Known Secondary structure 


TT



TT


TTS
B

TT


SSB

TTS

TT
TTT
TTS
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   377..380.........390.........400.........410.........420.........430.........440.........450......
 
   346...350.........360.........370.........380.........390.........400... ......410......
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Query Sequence  TIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGHRPVAVMEYDHE. . . . . . . . . SVDLSEWVKDKLA
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Template Sequence  QFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTA
Template Known Secondary structure  GGG
TT
TSTTTTT
GGGGGS
S
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   457..460.........470.........480.........490.........500.........510.........520.........530......
 
   417..420.........430.........440.........
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Query Sequence  RFQQPVRWLTLPPELKNGGIKISRQALKEWVQR
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Template Sequence  PYKYPRKIEFVLNLPKTVTGKIQRAKLRDKEWK
Template Known Secondary structure  GGGS
S
S


B
TT

B


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   537..540.........550.........560.........
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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