Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 12 Aligned Residues 432 % Identity 21% Template c3etcB_ PDB info PDB header:ligase Chain: B: PDB Molecule:amp-binding protein; PDBTitle: 2.1 a structure of acyl-adenylate synthetase from methanosarcina2 acetivorans containing a link between lys256 and cys298 Resolution 2.10 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.						.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.
Query SS confidence																											.	.	.	.	.
Query Sequence		M	I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	.	.	.	.	.	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C
Query Conservation																											.	.	.	.	.
Alig confidence																											.	.	.	.	.
Template Conservation
Template Sequence		F	N	F	A	Y	D	V	V	D	V	Y	A	R	D	S	P	E	K	L	A	M	I	W	C	D	D	Y	G	N	E	K	I	F	T	F	K	D	L	K	Y	Y	S	D	K	A	A	N	F	F	V	K	H	G	I	G	K	G	D	Y	V	M	L	T	L	K	S	R	Y	D	F	W	Y	C	M	L	G	L	H	K	L
Template Known Secondary structure								T								S	T	T	S								S	S	S																								T	T			T	T								T	T		T
Template Predicted Secondary structure
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																																	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	R	V	L	P	V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	N	T	F	P	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	T	S	L	H	I	Q	L	V
Query Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	I	A	V	P	A	T	H	M	L	K	T	R	D	I	V	Y	R	I	E	K	A	G	L	K	M	I	V	C	I	A	E	D	D	V	P	E	Q	V	D	E	A	H	A	E	C	G	D	I	P	L	K	K	A	K	V	G	G	D	V	L	E	G	W	I	D	F	R	K	E	L	E	E	S	S	P	I	F	E
Template Known Secondary structure		T								T	T														T		S						S	S	T	T														S									S	S	S			T	T											S		S
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	P	T	G	E	V	S	T	K	N	E	D	I	C	L	V	Y	F	S	S	G	T	A	G	F	P	K	M	V	E	H	D	N	T	Y	P	L	G	H	I	L	T	A	K	Y	W	Q	N	V	E	D	D	G	L	H	Y	T	V	A	D	S	G	W	G	K	C	V	W	G	K	L	Y	G	Q	W	I	A	G	C	A
Template Known Secondary structure					G	G	G	S			T	T	S										S	S	S	S								T	T											T	T	S				T	T									T	T	S	T						T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
		204	.	.	.	.	.	210							.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure									.	.	.	.	.	.																					.	.	.	.	.	.																															.
Query SS confidence									.	.	.	.	.	.																					.	.	.	.	.	.																															.
Query Sequence		T	V	R	D	K	Q	P	.	.	.	.	.	.	L	E	Q	M	L	A	G	C	T	H	A	S	L	V	P	T	Q	L	W	R	.	.	.	.	.	.	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	.	Q	G	I	R	C	F	C	G	Y	G
Query Conservation									.	.	.	.	.	.																					.	.	.	.	.	.																															.
Alig confidence									.	.	.	.	.	.																					.	.	.	.	.	.																															.
Template Conservation
Template Sequence		V	F	V	Y	D	Y	D	R	F	E	A	K	N	M	L	E	K	A	S	K	Y	G	V	T	T	F	C	A	P	P	T	I	Y	R	F	L	I	K	E	D	L	S	H	Y	N	F	S	T	L	K	Y	A	V	V	A	G	E	P	L	N	P	E	V	F	N	R	F	L	E	F	T	G	I	K	L	M	E	G	F	G
Template Known Secondary structure								S	S														T																	S		T	T	T	T	T			S								S	S															S
Template Predicted Secondary structure
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.																			.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	T	E	F	A	S	T	V	C	A	K	E	A	D	G	L	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	S	P	L	P	G	R	E	V	K	I	V	N	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	D	E	G	W	Y
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	T	E	T	V	V	T	I	A	T	F	P	W	M	E	P	K	P	G	S	I	G	K	P	T	P	G	Y	K	I	E	L	M	D	R	D	G	R	L	C	E	V	G	E	E	G	E	I	V	I	N	T	M	E	G	K	P	V	G	L	F	V	H	Y	G	K	D	P	E	R	T	E	E	T	W	H	D	G	Y	Y
Template Known Secondary structure			T	T	S	S							T	T	S				T	T			B				T	T								T	T	S		B			T	T										T	T				T	T						T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
		333	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
Predicted Secondary structure											.																																																																.	.	.	.	.	.	.
Query SS confidence											.																																																																.	.	.	.	.	.	.
Query Sequence		A	T	R	D	R	G	E	M	H	.	N	G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	E	S	.	.	.	.	.	.	.
Query Conservation											.																																																																.	.	.	.	.	.	.
Alig confidence											.																																																																.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	T	G	D	M	A	W	M	D	E	D	G	Y	L	W	F	V	G	R	A	D	D	I	I	K	T	S	G	Y	K	V	G	P	F	E	V	E	S	A	L	I	Q	H	P	A	V	L	E	C	A	I	T	G	V	P	D	P	V	R	G	Q	V	I	K	A	T	I	V	L	T	K	D	Y	T	P	S	D	S	L	K
Template Known Secondary structure											T	T	S								S	S	S					T	T													T	T	S	T	T												T	T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		432	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	L	S	E	W	V	K	D	K	L	A	R	F	Q	Q	P	V	R	W	L	T	L	P	P	E	L	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	E	L	Q	D	H	V	K	N	V	T	A	P	Y	K	Y	P	R	I	I	E	F	V	P	E	L	P	K
Template Known Secondary structure												S		G	G	G			S						S
Template Predicted Secondary structure
Template SS confidence
		512	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.