Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 28 Aligned Residues 337 % Identity 19% Template c3e53A_ PDB info PDB header:ligase Chain: A: PDB Molecule:fatty-acid-coa ligase fadd28; PDBTitle: crystal structure of n-terminal domain of a fatty acyl amp2 ligase faal28 from mycobacterium tuberculosis Resolution 2.35 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.										.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.
Query Sequence		I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	.	.	.	.	.	.	.	.	.	N	D	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L
Query Conservation																								.	.	.	.	.	.	.	.	.
Alig confidence						.																		.	.	.	.	.	.	.	.	.																										.
Template Conservation						.																																																				.
Template Sequence		S	L	P	A	.	A	L	R	A	C	A	R	L	Q	P	H	D	P	A	F	T	F	X	D	Y	E	Q	D	W	D	G	V	A	I	T	L	T	W	S	Q	L	Y	R	R	T	L	N	V	A	Q	E	L	S	R	C	G	.	S	T	G	D	R	V	V	I	S	A	P	Q	G	L	E	Y	V	V	A	F	L	G	A
Template Known Secondary structure						.									S	T	T	S									S	S		S	S																							T	T	S	S	.		T	T									S	S
Template Predicted Secondary structure						.																																																				.
Template SS confidence
		5	.	.	.		.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		L	Q	C	G	A	R	V	L	P	V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	.	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A
Query Conservation																																							.
Alig confidence																	.	.	.																				.																																		.	.	.	.	.	.
Template Conservation																	.	.	.																																																						.	.	.	.	.	.
Template Sequence		L	Q	A	G	R	I	A	V	P	L	S	V	P	Q	R	.	.	.	S	D	S	V	L	S	D	S	S	P	V	A	I	L	T	T	S	S	A	V	D	D	V	V	Q	H	V	P	P	S	I	I	E	V	D	L	L	D	L	D	A	P	E	Y	P	S	T	A	Y	L	Q	Y	T	.	.	.	.	.	.	P	A	G
Template Known Secondary structure				T	T												.	.	.	T	T									S						T	T	T						T	T								G	G	G	S		T	T						S								.	.	.	.	.	.
Template Predicted Secondary structure																	.	.	.																																																						.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.				.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.					.	.	.	.	.	.	.	180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.	.	.	.																.																								.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.																.																								.	.	.	.	.	.	.
Query Sequence		A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	.	.	.	.	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	.	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	.	.	.	.	.	.	.	L	E	Q	M	L	A	G	C	T
Query Conservation																							.	.	.	.																.																								.	.	.	.	.	.	.
Alig confidence																							.	.	.	.																.																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	X	S	H	Q	N	V	R	V	N	F	E	Q	L	X	S	G	Y	F	A	D	G	I	P	P	P	N	S	A	L	V	S	W	L	P	F	Y	H	D	X	G	L	V	I	G	I	C	A	P	I	L	G	G	Y	P	A	V	L	T	S	P	V	S	F	L	Q	R	P	A	R	W	X	H	L	X	A	S	D	F
Template Known Secondary structure																												T	T									T	T	S								T							T															T								S	S	S	S
Template Predicted Secondary structure
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260
		220	.	.	.	.	.	.	.	.	.	230	.	.											.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.								.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Query Sequence		H	A	S	L	V	P	T	Q	L	W	R	L	L	.	.	.	.	.	.	.	.	.	.	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	Q	G	.	.	.	.	.	.	.	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E
Query Conservation															.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	A	F	S	A	A	P	N	F	A	F	E	L	A	A	R	R	T	T	D	D	D	X	A	G	R	D	L	G	N	I	L	T	I	L	S	G	S	E	R	V	Q	A	A	T	I	K	R	F	A	D	R	F	A	R	F	N	L	Q	E	R	V	I	R	P	S	Y	G	L	A	E	A	T	V	Y	V	A	T	S	K
Template Known Secondary structure																					T	T	T	T	T	T				T	T								S	S	S															T	T	T			G	G	G								G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
		283	.	.	.	.																										.	.	290	.	.	.	.	.	.	.	.	.	300	.	.												.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	G	S	P	L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	G	Q	P	P	E	T	V	D	F	D	T	E	S	L	S	A	G	H	A	K	P	C	A	G	A	T	S	L	I	S	Y	X	L	P	R	S	P	I	V	R	I	V	D	S	D	T	C	I	E	C	P	D	G	T	V	G	E	I	W	V	H	G	D	N	V	A	N	G	Y	W	Q	K	P	D	E	S	E	R	T
Template Known Secondary structure		T	T	S														T	T	B																	S	S	S							T	T	T	T					T	T	B								S	T	T	S				B	T	T
Template Predicted Secondary structure
Template SS confidence
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
		327	.													.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	D	.	.	.	.	.	.	.	.	.	.	.	.	E	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	G	K	I	V	T	P	S	P	G	T	P	E	G	P	W	L	R	T	G	D	S	G	F	V	T	D	G	K	X	F	I	I	G
Template Known Secondary structure				B			B	S			T	T						B											T	T
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions