Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 13 Aligned Residues 440 % Identity 19% Template c3dhvA_ PDB info PDB header:ligase Chain: A: PDB Molecule:d-alanine-poly(phosphoribitol) ligase; PDBTitle: crystal structure of dlta protein in complex with d-alanine2 adenylate Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C	G	A	R	V	L	P	V
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		L	L	E	.	Q	I	E	K	W	A	A	E	T	P	D	Q	T	A	F	V	W	R	D	A	K	I	T	Y	K	Q	L	K	E	D	S	D	A	L	A	H	W	I	S	S	E	Y	P	D	D	R	S	P	I	M	V	Y	G	H	M	Q	P	E	M	I	I	N	F	L	G	C	V	K	A	G	H	A	Y	I	P	V
Template Known Secondary structure					.									S	T	T	S						T	T																							S	T	T										S	S														T	T
Template Predicted Secondary structure					.
Template SS confidence
		3	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.												120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	N	T	F	P	A	L	T	S	L	H	.	.	.	.	.	.	.	.	.	.	.	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.
Template Conservation																																																																										.	.	.	.	.
Template Sequence		D	L	S	I	P	A	D	R	V	Q	R	I	A	E	N	S	G	A	K	L	L	L	S	A	T	A	V	T	V	T	D	L	P	V	R	I	V	S	E	D	N	L	K	D	I	F	F	T	H	K	G	N	T	P	N	P	E	H	A	V	K	G	D	E	N	F	Y	I	I	Y	T	S	.	.	.	.	.	P	K	G
Template Known Secondary structure			T	T	S													T							S	S				S	S			S	S					T										T	T	T					G	G	G	S			T	T	S									.	.	.	.	.
Template Predicted Secondary structure																																																																										.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.
Query Sequence		A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	.	.	.	.	.	.	R	D	K	Q	P	L	E	Q	M	L	A	G	C	T	H	A	S	L	V	P
Query Conservation																																																								.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	I	T	Y	N	C	L	V	S	F	T	K	W	A	V	E	D	F	N	L	Q	T	G	Q	V	F	L	N	Q	A	P	F	S	F	D	L	S	V	M	D	I	Y	P	S	L	V	T	G	G	T	L	W	A	I	D	K	D	M	I	A	R	P	K	D	L	F	A	S	L	E	Q	S	D	I	Q	V	W	T	S
Template Known Secondary structure																				T	T			S	S							S		T	T	S	G	G	G										T	T													S												T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		226	.	.	.	230	.								.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.								.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.																														.	.																									.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.																														.	.																									.	.	.	.	.	.	.
Query Sequence		T	Q	L	W	R	L	.	.	.	.	.	.	.	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	.	.	Q	G	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E	A	D	.	.	.	.	.	.	.	G	L	A	D	V
Query Conservation								.	.	.	.	.	.	.																														.	.																									.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.																														.	.																									.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	P	S	F	A	E	M	C	L	M	E	A	S	F	S	E	S	M	L	P	N	M	K	T	F	L	F	C	G	E	V	L	P	N	E	V	A	R	K	L	I	E	R	F	P	K	A	T	I	M	N	T	Y	G	P	T	E	A	T	V	A	V	T	G	I	H	V	T	E	E	V	L	D	Q	Y	K	S	L	P	V
Template Known Secondary structure											T	S	T	T		S	T	T	T	S	T	T								S	S															T	T										G	G	G	S	S		S														S	S
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		290	.	.	.	.	.	.	.	.	.	300	.	.	.												.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.					330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Query Sequence		G	S	P	L	P	G	R	E	V	K	I	V	N	N	.	.	.	.	.	.	.	.	.	.	.	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	D	E	.	.	.	.	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G	R	L	D	N	L
Query Conservation																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.																											.	.	.	.
Template Conservation
Template Sequence		G	Y	C	K	S	D	C	R	L	L	I	M	K	E	D	G	T	I	A	P	D	G	E	K	G	E	I	V	I	V	G	P	S	V	S	V	G	Y	L	G	S	P	E	L	T	E	K	A	F	T	M	I	D	G	E	R	A	Y	K	T	G	D	A	G	Y	V	E	N	G	L	L	F	Y	N	G	R	L	D	F	Q
Template Known Secondary structure						T	T								S	S	S	S	B			T	T									S	T	T	S		S		B	T	T													T	T														T	T								G	G	G
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.									.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.	.	.	.	.	.
Query SS confidence																																																				.	.	.	.	.	.	.	.
Query Sequence		F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	E	S	.	.	.	.	.	.	.	.	V	D	L	S	E	W	V	K	D	K	L	A	R	F	Q	Q	P	V	R	W	L	T
Query Conservation																																																				.	.	.	.	.	.	.	.
Alig confidence																																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	L	H	G	Y	R	M	E	L	E	E	I	E	H	H	L	R	A	C	S	Y	V	E	G	A	V	I	V	P	I	K	K	G	E	K	Y	D	Y	L	L	A	V	V	V	P	G	E	H	S	F	E	K	E	F	K	L	T	S	A	I	K	K	E	L	N	E	R	L	P	N	Y	M	I	P	R	K	F	M	Y
Template Known Secondary structure					S	S															S	T	T											S	S	S	S												S				S	S														T	T	S		G	G	G	S		S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		427	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	P	E	L	K	N	G	G	I	K	I	S	R	Q	A	L	K	E	W	V	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	S	S	I	P	M	T	P	N	G	K	V	D	R	K	K	L	L	S	E	V	T
Template Known Secondary structure			S				B		T	T	S	S	B
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.