Phyre 2 alignment of P37353 with c2y4oA

Job Description P37353
Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012

Rank 29 Aligned Residues 329

% Identity 16% Template c2y4oA_

PDB info PDB header:ligase Chain: A: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak2 in complex with phenylacetyl adenylate

Resolution 1.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																																																																	.	.	.	.
Query SS confidence																																																																	.	.	.	.
Query Sequence	D	G	E	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	.	.	.	.	P	F	G	D	H	D	D	W	L	L	S	L
Query Conservation																																																																	.	.	.	.
Alig confidence																																																																	.	.	.	.
Template Conservation
Template Sequence	A	D	L	A	K	F	P	F	S	T	K	N	D	L	R	D	N	Y	P	F	G	L	F	A	V	P	R	E	Q	V	V	R	V	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	R	D	I	D	T	W	A	N	V	T	A	R	S	I	R	A	A	G	G	R	P	G	D	T	L	H	N	A	F	G
Template Known Secondary structure	G	G	G	G	G	S			B							T	T	T	T	T	T	T		S	S		G	G	G										S	S	S	S																									T	T			T	T							S
Template Predicted Secondary structure
Template SS confidence
	62	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.

	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.								.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																		.	.	.	.	.																				.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.																				.	.	.	.	.	.	.
Query Sequence	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	L	E	Q	M	L	.	.	.	.	.	A	G	C	T	H	A	S	L	V	P	T	Q	L	W	R	L	L	V	N	.	.	.	.	.	.	.	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I
Query Conservation																																		.	.	.	.	.																				.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation
Template Sequence	Y	G	L	F	T	G	G	L	G	I	H	Y	G	A	E	R	L	G	C	M	V	V	P	M	S	G	G	Q	T	E	K	Q	V	Q	L	I	R	D	F	E	P	K	I	I	L	V	T	P	S	Y	M	L	N	L	I	D	E	M	V	R	Q	G	M	D	P	A	E	S	S	L	K	I	G	I	F	G	A	E	P	W
Template Known Secondary structure		S	S	S														T								S																S																			T	T			G	G	G	S	S								S	S
Template Predicted Secondary structure
Template SS confidence
	142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

	251	.	.	.	.	.	.	.	.	260	.		.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.													.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure												.																												.															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																												.															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	V	E	L	T	E	Q	A	R	E	Q	.	G	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E	A	D	G	L	A	D	.	V	G	S	P	L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y
Query Conservation												.																												.															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																												.															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	T	Q	A	L	R	N	E	V	E	T	R	V	G	I	D	A	L	D	I	Y	G	L	S	E	V	M	G	P	G	V	A	C	E	C	V	E	T	K	D	G	P	V	I	W	E	D	H	F	Y	P	E	I	I	D	P	V	T	G	E	V	L	P	D	G	S	Q	G	E	L	V	F	T	S	L	T	K	E	A	M	P
Template Known Secondary structure													T										T	T	T	T									T	T	T			S					T	T	T								T	T	T			B			T	T										S	S		S	S	S
Template Predicted Secondary structure
Template SS confidence
	222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	W	R	N	G	Q	L	V	S	L	V	N	D	E	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A
Query Conservation
Alig confidence				.	.	.	.	.
Template Conservation				.	.	.	.	.
Template Sequence	V	I	R	.	.	.	.	.	Y	R	T	R	D	L	T	A	L	L	P	P	T	A	R	A	M	R	R	L	A	K	I	T	G	R	S	D	D	M	L	I	V	R	G	V	N	V	F	P	S	Q	I	E	E	I	V	V	A	L	P	L	L	S	G	Q	F	Q	I	T	L	S	R	D	G	H	M	D	R	L	D	L
Template Known Secondary structure		S	S	.	.	.	.	.													S	S	S	S	S										S	S						T	T														T	S	T	T													T	T
Template Predicted Secondary structure				.	.	.	.	.
Template SS confidence
	302	.	.						.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.

	397	.	.	400	.	.	.										.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure								.	.	.	.	.	.	.	.	.																.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.																.	.	.
Query Sequence	V	M	E	Y	D	H	E	.	.	.	.	.	.	.	.	.	S	V	D	L	S	E	W	V	K	D	K	L	A	R	F	.	.	.	Q	Q	P	V	R	W	L	T	L	P	P	E	L	K	N	G	G	I	K	I	S	R
Query Conservation								.	.	.	.	.	.	.	.	.																.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.																.	.	.
Template Conservation
Template Sequence	A	V	E	L	R	S	E	A	A	A	S	V	T	D	G	E	R	A	A	L	A	R	E	L	Q	H	R	I	K	T	M	V	G	V	S	S	G	V	T	V	L	A	A	G	G	I	P	A	T	A	T	G	K	A	R	R
Template Known Secondary structure										T	T																					T											T	T		S				T	T	S				S
Template Predicted Secondary structure
Template SS confidence
	377	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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