Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 30 Aligned Residues 356 % Identity 15% Template c2y27B_ PDB info PDB header:ligase Chain: B: PDB Molecule:phenylacetate-coenzyme a ligase; PDBTitle: crystal structure of paak1 in complex with atp from2 burkholderia cenocepacia Resolution 1.60 Å

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		79	80	.	.	.	.			.	.	.	.	.	90	.	.	.	.	.																									.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
Predicted Secondary structure								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	L	P	V	N	P	.	.	Q	L	P	Q	P	L	L	E	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q
Query Conservation								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	L	P	L	E	P	I	E	T	A	S	R	D	E	L	T	A	L	Q	L	E	R	L	K	W	S	L	R	H	A	Y	D	H	S	P	V	Y	R	R	K	F	D	E	A	G	V	H	P	D	D	L	K	T	L	A	D	L	S	R	F	P	F	T	T	K	G	D	L	R	D	S	Y	P	F	G	X	F	A	V	P
Template Known Secondary structure							G	G	G	G	S																																		T	T			G	G	G		S	S	G	G	G	G	G	G	S			B								T	T	T	T	T	T			S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170					.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.
Query SS confidence																																								.	.	.	.
Query Sequence		P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y	Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	.	.	.	.	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K
Query Conservation																																								.	.	.	.
Alig confidence																																								.	.	.	.
Template Conservation
Template Sequence		Q	D	R	I	S	R	I	H	A	S	S	G	T	T	G	K	P	T	V	V	G	Y	T	A	A	D	I	D	T	W	A	N	L	V	A	R	S	I	R	A	A	G	A	R	R	G	D	K	V	H	V	S	Y	G	Y	G	L	F	T	G	G	L	G	A	H	Y	G	A	E	R	A	G	L	T	V	I	P	F	G	G
Template Known Secondary structure		G	G	G										S	S	S	S																									T	T			T	T							S			S	S	S													T	T								S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		209	210	.	.	.	.	.						.	.	.	.	220	.	.	.	.	.	.	.								.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure									.	.	.	.	.													.	.	.	.	.	.	.																																		.															.
Query SS confidence									.	.	.	.	.													.	.	.	.	.	.	.																																		.															.
Query Sequence		Q	P	L	E	Q	M	L	.	.	.	.	.	A	G	C	T	H	A	S	L	V	P	T	Q	.	.	.	.	.	.	.	L	W	R	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	.	Q	G	I	R	C	F	C	G	Y	G	L	T	E	F	.
Query Conservation									.	.	.	.	.													.	.	.	.	.	.	.																																		.															.
Alig confidence									.	.	.	.	.													.	.	.	.	.	.	.																																		.															.
Template Conservation
Template Sequence		G	Q	T	E	K	Q	V	Q	L	I	Q	D	F	R	P	D	I	I	X	V	T	P	S	Y	X	L	S	I	A	D	E	I	E	R	Q	G	L	D	P	V	Q	S	S	L	R	I	G	I	F	G	A	E	P	W	T	N	D	X	R	V	A	I	E	Q	R	X	G	I	D	A	V	D	I	Y	G	L	S	E	V	X
Template Known Secondary structure																	S																			T	T			G	G	G	S	S								S	S															T	S									T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.													.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	T	V	C	A	K	E	A	D	G	L	A	D	V	G	S	P	L	P	G	R	E	V	K	I	V	N	.	.	.	.	.	.	.	.	.	.	.	.	N	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	D	E	G	W	Y	A	T	R	D	R	G	E	M	H	N
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.
Template Conservation																																																											.	.	.	.	.
Template Sequence		G	P	G	V	A	S	E	C	V	E	T	K	D	G	P	T	I	W	E	D	H	F	Y	P	E	I	I	D	P	E	T	G	E	V	L	P	D	G	E	L	G	E	L	V	F	T	S	L	T	K	E	A	L	P	I	I	R	.	.	.	.	.	Y	R	T	R	D	L	T	R	L	L	P	G	T	A	R	T	X	R
Template Known Secondary structure										T	T	T		S	S					T	T	T								T	T	T			B			T	T	S									S	S		S	S	S				S	.	.	.	.	.													S	S	S	S	S
Template Predicted Secondary structure																																																											.	.	.	.	.
Template SS confidence
		244	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300						.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.								.	.	.	.	.	.	410	.	.	.	.	.
Predicted Secondary structure																																																															.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.
Query Sequence		G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E	V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	E	.	.	.	.	.	.	.	S	V	D	L	S	E	W	V	K	D	K	L
Query Conservation																																																															.	.	.	.	.	.	.
Alig confidence																																																															.	.	.	.	.	.	.
Template Conservation
Template Sequence		R	X	E	K	I	T	G	R	S	D	D	X	X	I	V	R	G	V	N	V	F	P	T	Q	I	E	E	Q	L	L	K	Q	R	A	L	A	P	H	Y	Q	I	V	L	T	K	E	G	P	L	D	V	L	T	L	N	V	E	P	C	P	E	T	A	P	D	T	A	A	I	Q	V	A	K	Q	A	L	A	Y	D	I
Template Known Secondary structure										G	G	G					T	T													T	T		T	T	B		S										T	T										B		G	G	G	T	T
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		416	.	.	.	420	.	.				.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure									.	.	.
Query SS confidence									.	.	.
Query Sequence		A	R	F	Q	Q	P	V	.	.	.	R	W	L	T	L	P	P	E	L	K	N	G	G	I	K	I	S	R
Query Conservation									.	.	.
Alig confidence									.	.	.												.
Template Conservation																							.
Template Sequence		K	S	L	I	G	V	T	A	V	I	N	V	L	P	V	N	G	I	E	R	S	.	V	G	K	A	R	R
Template Known Secondary structure																T	T		S				.	S	S	S
Template Predicted Secondary structure																							.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.		420	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions