Job Description P37353 Confidence 100.00% Date Thu Jan 5 11:55:31 GMT 2012 Rank 8 Aligned Residues 443 % Identity 17% Template c1amuB_ PDB info PDB header:peptide synthetase Chain: B: PDB Molecule:gramicidin synthetase 1; PDBTitle: phenylalanine activating domain of gramicidin synthetase 12 in a complex with amp and phenylalanine Resolution 1.90 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	F	S	D	W	P	W	R	H	W	R	Q	V	R	G	E	T	I	A	L	R	L	N	D	E	Q	L	N	W	R	E	L	C	A	R	V	D	E	L	A	S	G	F	A	V	Q	G	V	V	E	G	S	G	V	M	L	R	A	W	N	T	P	Q	T	L	L	A	W	L	A	L	L	Q	C	G	A	R	V	L	P
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		T	I	H	Q	.	L	F	E	E	Q	V	S	K	R	P	N	N	V	A	I	V	C	E	N	E	Q	L	T	Y	H	E	L	N	V	K	A	N	Q	L	A	R	I	F	I	E	K	G	I	G	K	D	T	L	V	G	I	M	M	E	K	S	I	D	L	F	I	G	I	L	A	V	L	K	A	G	G	A	Y	V	P
Template Known Secondary structure						.										T	T	S						T	T																							T			T	T									S	S													T	T
Template Predicted Secondary structure						.
Template SS confidence
		40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.						110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		V	N	P	Q	L	P	Q	P	L	L	E	E	L	L	P	N	L	T	L	Q	F	A	L	V	P	D	G	E	.	.	.	.	.	N	T	F	P	A	L	T	S	L	H	I	Q	L	V	E	G	A	H	A	A	T	W	Q	P	T	R	L	C	S	M	T	L	T	S	G	S	T	G	L	P	K	A	A	V	H	T	Y
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence		I	D	I	E	Y	P	K	E	R	I	Q	Y	I	L	D	D	S	Q	A	R	M	L	L	T	Q	K	H	L	V	H	L	I	H	N	Q	F	N	G	Q	V	E	I	F	E	E	D	T	I	K	I	R	E	G	T	N	L	H	V	P	S	K	S	T	D	L	A	Y	V	I	Y	T	N	P	K	G	T	M	L	E	H
Template Known Secondary structure				T	T	S															S						G	G	G	G	G	G	G						S								S	S	G	G	G	S			S								T	T	S
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210								.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.
Query Sequence		Q	A	H	L	A	S	A	Q	G	V	L	S	L	I	P	F	G	D	H	D	D	W	L	L	S	L	P	L	F	H	V	S	G	Q	G	I	M	W	R	W	L	Y	A	G	A	R	M	T	V	R	D	K	Q	P	.	.	.	.	.	.	.	L	E	Q	M	L	A	G	C	T	H	A	S	L	V	P	T	Q	L	W
Query Conservation																																																								.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	G	I	S	N	L	K	V	F	F	E	N	S	L	N	V	T	E	K	D	R	I	G	Q	F	A	S	I	S	F	D	A	S	V	W	E	M	F	M	A	L	L	T	G	A	S	L	Y	I	I	L	K	D	T	I	N	D	F	V	K	F	E	Q	Y	I	N	Q	K	E	I	T	V	I	T	L	P	P	T	Y	V
Template Known Secondary structure														T	S				T	T							S		T	T	S	T											T	T	T												T												T	T
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.					.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																										.	.	.	.																			.	.
Query SS confidence																																																										.	.	.	.																			.	.
Query Sequence		R	L	L	V	N	R	S	S	V	S	L	K	A	V	L	L	G	G	A	A	I	P	V	E	L	T	E	Q	A	R	E	Q	G	I	R	C	F	C	G	Y	G	L	T	E	F	A	S	T	V	C	A	K	E	A	D	G	.	.	.	.	L	A	D	V	G	S	P	L	P	G	R	E	V	K	I	V	N	N	.	.
Query Conservation																																																										.	.	.	.																			.	.
Alig confidence																																																										.	.	.	.																			.	.
Template Conservation
Template Sequence		V	H	L	D	P	E	R	I	L	S	I	Q	T	L	I	T	A	G	S	A	T	S	P	S	L	V	N	K	W	K	E	K	V	T	Y	I	N	A	Y	G	P	T	E	T	T	I	C	A	T	T	W	V	A	T	K	E	T	I	G	H	S	V	P	I	G	A	P	I	Q	N	T	Q	I	Y	I	V	D	E	N	L
Template Known Secondary structure		T	T	S		T	T	T			S		S						S	S											T	T	T	S									G	G	G	S	S		S							S	S				S	S				B				T	T								T	T	S
Template Predicted Secondary structure
Template SS confidence
		285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.
											304	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.									.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	E	V	W	L	R	A	A	S	M	A	E	G	Y	W	R	N	G	Q	L	V	S	L	V	N	D	.	.	.	.	.	.	.	.	E	G	W	Y	A	T	R	D	R	G	E	M	H	N	G	K	L	T	I	V	G	R	L	D	N	L	F	F	S	G	G	E	G	I	Q	P	E	E
Query Conservation		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	K	S	V	G	E	A	G	E	L	C	I	G	G	E	G	L	A	R	G	Y	W	K	R	P	E	L	T	S	Q	K	F	V	D	N	P	F	V	P	G	E	K	L	Y	K	T	G	D	Q	A	R	W	L	S	D	G	N	I	E	Y	L	G	R	I	D	N	Q	V	K	I	R	G	H	R	V	E	L	E	E
Template Known Secondary structure			B			T	T										T	T						T	T													S	S	S	T	T	S													T	T	S								G	G	G					T	T
Template Predicted Secondary structure
Template SS confidence
		365	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																																						.	.
Query SS confidence																																						.	.
Query Sequence		V	E	R	V	I	A	A	H	P	A	V	L	Q	V	F	I	V	P	V	A	D	K	E	F	G	H	R	P	V	A	V	M	E	Y	D	H	.	.	E	S	V	D	L	S	E	W	V	K	D	K	L	A	R	F	Q	Q	P	V	R	W	L	T	L	P	P	E	L	K	N	G	G	I	K	I	S	R	Q	A	L	K
Query Conservation																																						.	.
Alig confidence																																						.	.
Template Conservation
Template Sequence		V	E	S	I	L	L	K	H	M	Y	I	S	E	T	A	V	S	V	H	K	D	H	Q	E	Q	P	Y	L	C	A	Y	F	V	S	E	K	H	I	P	L	E	Q	L	R	Q	F	S	S	E	E	L	P	T	Y	M	I	P	S	Y	F	I	Q	L	D	K	M	P	L	T	S	N	G	K	I	D	R	K	Q	L	P
Template Known Secondary structure								T	S	T	T												T	T	S											S	S															S		G	G	G	S		S						S	S			B		T	T	S	S	B		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.
		445
Predicted Secondary structure
Query SS confidence
Query Sequence		E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		525