Job Description P37686 Confidence 87.35% Date Thu Jan 5 11:57:01 GMT 2012 Rank 70 Aligned Residues 89 % Identity 20% Template c3q41B_ PDB info PDB header:transport protein Chain: B: PDB Molecule:glutamate [nmda] receptor subunit zeta-1; PDBTitle: crystal structure of the glun1 n-terminal domain (ntd) Resolution 3.40 Å

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		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	M	N	M	M	A	D	Y	G	F	T	R	T	L	I	V	T	D	N	M	L	T	K	L	G	M	A	G	D	V	Q	K	A	L	E	E	R	N	I	F	S	V	I	Y	D	G	T	Q	P	N	P	T	T	E	N	V	A	A	G	L	K	L	L	K	E	N	N	C	D	S	V	I	S	L	G	G	G	S	P	H
Query Conservation
Alig confidence																																																						.	.																						.	.
Template Conservation																																																						.	.																						.	.
Template Sequence		W	F	E	M	M	R	V	Y	N	W	N	H	I	I	L	L	V	S	D	D	H	E	G	R	A	A	Q	K	R	L	E	T	L	L	E	E	R	E	S	K	A	E	K	V	L	Q	F	D	P	G	T	K	.	.	N	V	T	A	L	L	M	E	A	R	E	L	E	A	R	V	I	I	L	S	A	.	.	S	E	D
Template Known Secondary structure									B											S	S															T	T	S	S											T	T		S	.	.											T	S	S									.	.
Template Predicted Secondary structure																																																						.	.																						.	.
Template SS confidence
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.			.	.	.
		102	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	C	A	K	G	I	A	L	V	A	A	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	A	A	T	V	Y	R	A	A	A	M	L	N
Template Known Secondary structure												T	T	T
Template Predicted Secondary structure
Template SS confidence
		227	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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