Job Description P37686 Confidence 100.00% Date Thu Jan 5 11:57:01 GMT 2012 Rank 16 Aligned Residues 334 % Identity 19% Template c3okfA_ PDB info PDB header:lyase Chain: A: PDB Molecule:3-dehydroquinate synthase; PDBTitle: 2.5 angstrom resolution crystal structure of 3-dehydroquinate synthase2 (arob) from vibrio cholerae Resolution 2.50 Å

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		1	.	.	.	.	.	.	.	.	10	.				.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.
Predicted Secondary structure													.	.	.																																																				.	.
Query SS confidence													.	.	.																																																				.	.
Query Sequence		M	A	A	S	T	F	F	I	P	S	V	.	.	.	N	V	I	G	A	D	S	L	T	D	A	M	N	M	M	A	D	Y	G	F	T	R	T	L	I	V	T	D	N	M	L	T	K	L	G	M	A	G	D	V	Q	K	A	L	E	E	R	N	I	F	S	.	.	V	I	Y	D	G	T	Q	P	N	P	T	T	E
Query Conservation													.	.	.																																																				.	.
Alig confidence													.	.	.																				.															.																	.	.
Template Conservation																																			.															.
Template Sequence		M	E	R	I	T	V	N	L	G	E	R	S	Y	P	I	S	I	G	A	G	L	F	A	N	P	A	L	L	S	L	S	A	K	.	Q	K	V	V	I	V	T	N	H	T	V	A	P	L	.	Y	A	P	A	I	I	S	L	L	D	H	I	G	C	Q	H	A	L	L	E	L	P	D	G	E	Q	Y	K	T	L	E
Template Known Secondary structure										G	G	G								T	T	G	G	G		G	G	G	G				T	T	.									T	T	T				.													T										S	S	G	G	G		B
Template Predicted Secondary structure																																			.															.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.		.	40	.	.	.	.	.	.	.	.	.	50	.	.		.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		76	.	.	.	80	.	.	.	.	.	.	.	.	.				90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.			140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																.	.	.																																																			.	.
Query SS confidence																.	.	.																																																			.	.
Query Sequence		N	V	A	A	G	L	K	L	L	K	E	N	N	C	.	.	.	D	S	V	I	S	L	G	G	G	S	P	H	D	C	A	K	G	I	A	L	V	A	A	N	G	G	D	I	R	D	Y	E	G	V	D	R	S	A	K	P	Q	L	P	M	I	A	I	N	T	T	.	.	A	G	T	A	S	E	M	T	R	F	C
Query Conservation																.	.	.																																																			.	.
Alig confidence																.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	F	N	T	V	M	S	F	L	L	E	H	N	Y	S	R	D	V	V	V	I	A	L	G	G	G	V	I	G	D	L	V	G	F	A	A	A	C	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	R	G	V	D	F	I	Q	I	P	T	T	L	L	S	Q	V	D	S	S	V	G	G	K	T
Template Known Secondary structure													T	T			T	T								S														G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G										S							T	S	S	S
Template Predicted Secondary structure																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.																	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure
Query SS confidence
Query Sequence		I	I	T	D	E	A	R	H	I	K	M	A	I	V	D	K	H	V	T	P	L	L	S	V	N	D	S	S	L	M	I	G	M	P	K	S	L	T	A	A	T	G	M	D	A	L	T	H	A	I	E	A	Y	V	S	I	A	A	T	P	I	T	D	A	C	A	L	K	A	V	T	M	I	A	E	N	L	P	L	A
Query Conservation
Alig confidence																		.	.	.																																					.	.
Template Conservation																		.	.	.																																					.	.
Template Sequence		A	V	N	H	P	L	G	K	N	M	I	G	A	F	Y	Q	.	.	.	P	K	A	V	V	I	D	T	D	C	L	T	T	L	P	A	R	E	F	A	A	G	M	A	E	V	I	K	Y	G	I	I	Y	D	S	A	.	.	F	F	D	W	L	E	A	Q	M	E	A	L	Y	A	L	D	E	Q	A	L	T	Y	A
Template Known Secondary structure						T	T											.	.	.		S						G	G	G	G	G	G	S																			T				.	.														T	T
Template Predicted Secondary structure																		.	.	.																																					.	.
Template SS confidence
		148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.				.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.			200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	D	G	S	N	A	K	A	R	E	A	M	A	Y	A	Q	F	L	A	G	M	A	F	N	N	A	S	L	G	Y	V	H	A	M	A	H	Q	L	G	G	F	Y	N	L	P	H	G	V	C	N	A	V	L	L	P	H	V	Q	V	F	N	S	K	V	A	A	A	R	L	R	D	C	A	A	A	M	G	V	N
Query Conservation
Alig confidence				.	.																																		.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.	.																																		.																						.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	A	.	.	R	C	C	Q	I	K	A	E	V	V	A	Q	D	E	K	G	I	R	A	L	L	N	L	G	H	T	F	G	H	A	I	E	A	.	H	M	G	Y	G	N	W	L	H	G	E	A	V	S	A	G	T	V	M	A	A	.	.	.	.	.	.	.	.	.	.	.	.	K	T	A	Q	L	Q	G	L	I
Template Known Secondary structure				.	.																	G	G	G	G	G	G	T	T										.				T	T	T	S															.	.	.	.	.	.	.	.	.	.	.	.						T	T	S	S
Template Predicted Secondary structure				.	.																																		.																						.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		223	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.													.	280	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.													.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	T	G	K	N	D	A	E	G	A	E	A	C	I	N	A	I	R	E	L	A	K	K	V	D	I	P	A	G	L	R	D	L	N	V	K	E	E	D	F	A	V	L	A	T	N	A	L	K	D	A	C	G	F	T	N	.	.	.	.	.	.	.	.	.	.	.	.	P	I	Q	A	T	H	E	E	I	V	A	I
Query Conservation																																																										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																								.																								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.																								.
Template Sequence		.	.	.	.	.	.	.	.	.	D	A	S	Q	F	E	R	I	L	A	I	L	K	K	A	H	L	P	V	R	T	P	E	.	N	M	T	F	A	D	F	M	Q	H	M	M	R	D	K	K	V	L	A	G	E	L	R	L	V	L	P	T	S	I	G	T	S	A	V	V	K	G	V	P	E	A	V	I	A	Q	A
Template Known Secondary structure		.	.	.	.	.	.	.	.	.															T	T				S			T	.	T											T	G	G	G	T			T	T										T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.																								.
Template SS confidence
											290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		379	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	A	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	E	Y	C
Template Known Secondary structure					T
Template Predicted Secondary structure
Template SS confidence
		360	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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