Job Description P37686 Confidence 45.83% Date Thu Jan 5 11:57:01 GMT 2012 Rank 198 Aligned Residues 80 % Identity 14% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

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		9	10	.	.	.	.					.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure								.	.	.	.				.	.	.
Query SS confidence								.	.	.	.				.	.	.
Query Sequence		P	S	V	N	V	I	.	.	.	.	G	A	D	.	.	.	S	L	T	D	A	M	N	M	M	A	D	Y	G	F	T	R	T	L	I	V	T	D	N	M	L	T	K	L	G	M	A	G	D	V	Q	K	A	L	E	E	R	N	I	F	S	V	I	Y	D	G	T	Q	P	N	P	T	T	E	N	V	A	A	G	L
Query Conservation								.	.	.	.				.	.	.
Alig confidence								.	.	.	.				.	.	.														.							.																																			.
Template Conservation																															.							.																																			.
Template Sequence		Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	K	R	G	.	L	K	P	A	L	I	.	A	A	D	T	Y	R	P	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	.	V	D	I	V	K	E	G	M
Template Known Secondary structure											S	S	S	S	T	T															.							.			S				T	T	G	G	G	S	S							S	S							S	S	S			S	S	.	S	T	T
Template Predicted Secondary structure																															.							.																																			.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.		.	170	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	K	E	N	N	C	D	S	V	I
Query Conservation
Alig confidence						.	.
Template Conservation						.	.
Template Sequence		E	K	F	K	.	.	K	A	D	V	L	I
Template Known Secondary structure			T	T	S	.	.	S		S
Template Predicted Secondary structure						.	.
Template SS confidence
		177	.	.	180			.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions