Job Description P37686 Confidence 84.04% Date Thu Jan 5 11:57:01 GMT 2012 Rank 83 Aligned Residues 81 % Identity 16% Template c2j37W_ PDB info PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs Resolution 8.00 Å

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		9	10	.	.	.	.					.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure								.	.	.	.				.	.	.
Query SS confidence								.	.	.	.				.	.	.
Query Sequence		P	S	V	N	V	I	.	.	.	.	G	A	D	.	.	.	S	L	T	D	A	M	N	M	M	A	D	Y	G	F	T	R	T	L	I	V	T	D	N	M	L	T	K	L	G	M	A	G	D	V	Q	K	A	L	E	E	R	N	I	F	S	V	I	Y	D	G	T	Q	P	N	P	T	T	E	N	V	A	A	G	L
Query Conservation								.	.	.	.				.	.	.
Alig confidence								.	.	.	.				.	.	.																							.	.																						.	.
Template Conservation																																								.	.																						.	.
Template Sequence		G	N	V	I	M	F	V	G	L	Q	G	S	G	K	T	T	T	C	S	K	L	A	Y	Y	Y	Q	R	K	G	W	K	T	C	L	I	C	A	D	.	.	T	F	R	A	G	A	F	D	Q	L	K	Q	N	A	T	K	A	R	I	P	F	.	.	Y	G	S	Y	T	E	M	D	P	V	I	I	A	S	E	G	V
Template Known Secondary structure		S								S	T	T	S	S															T	T										.	.		S	S	S														T				.	.							S
Template Predicted Secondary structure																																								.	.																						.	.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.			.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	K	E	N	N	C	D	S	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K	F	K	N	E	N	F	E	I	I	I
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions