Job Description P37686 Confidence 85.44% Date Thu Jan 5 11:57:01 GMT 2012 Rank 79 Aligned Residues 81 % Identity 14% Template c1qzwC_ PDB info PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication Resolution 4.10 Å

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		9	10	.	.	.	.					.	.	.				.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure								.	.	.	.				.	.	.
Query SS confidence								.	.	.	.				.	.	.
Query Sequence		P	S	V	N	V	I	.	.	.	.	G	A	D	.	.	.	S	L	T	D	A	M	N	M	M	A	D	Y	G	F	T	R	T	L	I	V	T	D	N	M	L	T	K	L	G	M	A	G	D	V	Q	K	A	L	E	E	R	N	I	F	S	V	I	Y	D	G	T	Q	P	N	P	T	T	E	N	V	A	A	G	L
Query Conservation								.	.	.	.				.	.	.
Alig confidence								.	.	.	.				.	.	.														.							.																									.	.
Template Conservation																															.							.																									.	.
Template Sequence		P	F	I	I	M	L	V	G	V	Q	G	S	G	K	T	T	T	A	G	K	L	A	Y	F	Y	K	K	R	G	.	Y	K	V	G	L	V	.	A	A	D	V	Y	R	P	A	A	Y	D	Q	L	L	Q	L	G	N	Q	I	G	V	Q	V	.	.	Y	G	E	P	N	N	Q	N	P	I	E	I	A	K	K	G	V
Template Known Secondary structure		S								S	S	S	S	S	S	T	T	T										T	T	S	.					B		.					S	S	S		S											T	T				.	.				S	S				T	T
Template Predicted Secondary structure																															.							.																									.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.		.	.	.	.	.	130		.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		82	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	L	K	E	N	N	C	D	S	V	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	I	F	V	K	N	K	M	D	I	I	I
Template Known Secondary structure							T	T		S
Template Predicted Secondary structure
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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