Phyre 2 alignment of P12998 with d1tpla

Job Description P12998
Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012

Rank 120 Aligned Residues 329

% Identity 11% Template d1tpla_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Beta-eliminating lyases

Resolution 2.30

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A
Query Conservation
Alig confidence															.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.													.	.	.	.	.	.	.	.	.	.	.
Template Sequence	K	D	I	Y	I	D	L	L	T	D	S	G	T	N	.	A	M	S	D	K	Q	W	A	G	M	M	M	.	.	.	.	.	.	.	.	.	.	.	G	D	E	A	Y	A	G	S	E	N	F	Y	H	L	E	R	T	V	Q	E	L	F	G	F	K	H	I	V	P	T	H	Q	G	R	G	A	E	N	L	L	S	Q
Template Known Secondary structure	G	G		S				S		S	S	S			.											T	T	.	.	.	.	.	.	.	.	.	.	.					S	S	S																		S						S	S
Template Predicted Secondary structure															.													.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	41	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.												.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.

	118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.					.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.														.																	.	.	.	.
Query SS confidence																																					.	.	.	.	.														.																	.	.	.	.
Query Sequence	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	.	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	.	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	.	.	.	.	D	S	A	P	L
Query Conservation																																					.	.	.	.	.														.																	.	.	.	.
Alig confidence																																					.	.	.	.	.														.																	.	.	.	.
Template Conservation
Template Sequence	L	A	I	K	P	G	Q	Y	V	A	G	N	M	Y	K	N	G	A	V	F	V	D	I	V	R	D	E	A	H	D	A	G	L	N	I	A	F	K	G	D	I	D	L	K	K	L	Q	K	L	I	D	E	K	G	A	E	N	I	A	Y	I	C	L	A	V	T	V	N	L	A	G	G	Q	P	V	S	M	A	N	M
Template Known Secondary structure					T	T						S					S	S						B		T	T	S	S		S	S				T	T	T	T		B														G	G	G								S	S	B		S	T	T		B
Template Predicted Secondary structure
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.

	188	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.												.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240			.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query SS confidence																					.	.	.	.	.	.	.	.	.	.	.																																		.	.
Query Sequence	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	.	.	.	.	.	.	.	.	.	.	.	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	.	.	S	G	A	A	V	L	C	S	S	T	V	A	D	Y
Query Conservation																					.	.	.	.	.	.	.	.	.	.	.																																		.	.
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.																																		.	.
Template Conservation
Template Sequence	R	A	V	R	E	L	T	A	A	H	G	I	K	V	F	Y	D	A	T	R	C	V	E	N	A	Y	F	I	K	E	Q	E	Q	G	F	E	N	K	S	I	A	E	I	V	H	E	M	F	S	Y	A	D	G	C	T	M	S	G	K	K	D	C	L	V	N	I	G	G	F	L	C	M	N	D	D	E	M	F	S	S
Template Known Secondary structure										T	T								T	T												S	T	T		T	T	S												T	S	S						T	T	T	T	T			S	S
Template Predicted Secondary structure
Template SS confidence
	198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.

	255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.										.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.
Query Sequence	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	.	.	.	.	.	.	.	.	.	I	V
Query Conservation																																																																						.	.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	A	K	E	L	V	V	V	Y	E	G	M	P	S	Y	G	G	L	A	G	R	D	M	E	A	M	A	I	G	L	R	E	A	M	Q	Y	E	Y	I	E	H	R	V	K	Q	V	R	Y	L	G	D	K	L	K	A	A	G	V	P	I	V	E	P	V	G	G	H	A	V	F	L	D	A	R	R	F	C	E	H	L	T
Template Known Secondary structure										S	S			S	S	S																T	T																					T	T	T			B		S	S			S	S										T	T	T	S
Template Predicted Secondary structure
Template SS confidence
	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.

	326	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.		.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure															.																														.
Query SS confidence															.																														.
Query Sequence	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	.	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	.	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation															.																														.
Alig confidence															.														.	.	.	.	.												.
Template Conservation																													.	.	.	.	.
Template Sequence	Q	D	E	F	P	A	Q	S	L	A	A	S	I	Y	V	E	T	G	V	R	S	M	E	R	G	I	K	L	.	.	.	.	.	E	T	V	R	L	T	I	P	R	R	V	Y	T	Y	A	H	M	D	V	V	A	D	G	I	I	K	L
Template Known Secondary structure	G	G	G															S											.	.	.	.	.									T	T	S
Template Predicted Secondary structure																													.	.	.	.	.
Template SS confidence
	358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.						.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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