Phyre 2 alignment of P12998 with d1iuga

Job Description P12998
Confidence 99.96% Date Wed Jan 25 15:20:38 GMT 2012

Rank 195 Aligned Residues 323

% Identity 14% Template d1iuga_

SCOP info PLP-dependent transferase-like PLP-dependent transferases Cystathionine synthase-like

Resolution 2.20

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	48	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.
Predicted Secondary structure										.																																													.	.
Query SS confidence										.																																													.	.
Query Sequence	D	Y	L	G	L	S	H	H	P	.	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	.	.	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	E	D
Query Conservation										.																																													.	.
Alig confidence				.						.																							.	.	.	.																			.	.
Template Conservation				.																													.	.	.	.
Template Sequence	D	W	L	.	L	T	P	G	P	V	R	L	H	P	K	A	L	E	A	L	A	R	P	Q	L	H	H	R	T	E	A	A	.	.	.	.	R	E	V	F	L	K	A	R	G	L	L	R	E	A	F	R	T	E	G	E	V	L	I	L	T	G	S	G	T	L	A	M	E	A	L	V	K	N	L	F	A	P	G	E
Template Known Secondary structure				.		S	S	S	S													S					T	T	S				.	.	.	.																T		S	S							S																T	T
Template Predicted Secondary structure				.																													.	.	.	.
Template SS confidence
	2	.	.		.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.					.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.

	125	.	.	.	.	130	.	.	.	.	.			.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence	R	I	A	A	D	R	L	S	H	A	S	.	.	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M
Query Conservation												.	.
Alig confidence												.	.																											.
Template Conservation																																								.
Template Sequence	R	V	L	V	P	V	Y	G	K	F	S	E	R	F	Y	E	I	A	L	E	A	G	L	V	V	E	R	L	D	Y	P	Y	G	D	T	P	R	P	E	.	D	V	A	K	E	G	Y	A	G	L	L	L	V	H	S	E	T	S	T	G	A	L	A	D	L	P	A	L	A	R	A	F	K	E	K	N	P	E	G	L
Template Known Secondary structure								S													T	T										T	T					T	T	.	T	S			S	S		S						S			T	T	T	T																	T	T
Template Predicted Secondary structure																																								.
Template SS confidence
	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.		.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.

	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.													.	.	.	.	.	270
Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	.	.	.	.	.	.	.	.	.	.	.	.	S	T	S	M	P	P
Query Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.																																																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.	.	.
Template Sequence	V	G	A	D	M	V	T	S	L	.	.	.	.	L	V	G	E	V	A	L	E	A	M	G	V	D	A	A	A	S	G	S	Q	G	L	M	C	P	P	G	L	G	F	V	A	L	S	P	R	A	L	E	R	L	K	P	R	G	Y	Y	L	D	L	A	R	E	L	K	A	Q	K	E	G	E	S	A	W	T	P	A
Template Known Secondary structure						T	T	T	B	.	.	.	.	T	T	B				S	G	G	G	T		S													S														T					S	S	T	T										T	T	T			S	S
Template Predicted Secondary structure										.	.	.	.
Template SS confidence
	156	.	.	.	160	.	.	.	.					.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.

	271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.
Query SS confidence																																																.	.
Query Sequence	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	.	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I
Query Conservation																																																.	.
Alig confidence																																																.	.
Template Conservation
Template Sequence	I	N	L	V	L	A	V	A	A	V	L	E	E	V	L	P	R	L	E	E	H	L	A	L	K	A	W	Q	N	A	L	L	Y	G	V	G	E	E	G	G	L	R	P	V	P	K	R	F	S	P	A	V	A	A	F	Y	L	P	E	G	V	P	Y	A	R	V	K	E	A	F	A	Q	R	G	A	V	I	A	G	G
Template Known Secondary structure															G	G	G																						T	T				S		S	S	B		T	T								T	T												T	T	T
Template Predicted Secondary structure
Template SS confidence
	233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	349	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence				.	.	.
Template Conservation				.	.	.
Template Sequence	Q	G	P	.	.	.	L	K	G	K	V	F	R	L	S	L	M	G	A	Y	D	R	Y	E	A	L	G	V	A	G	M	F	R	E	V
Template Known Secondary structure		G	G	.	.	.	G	T	T	T								S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
	313	.	.				.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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