Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 10 Aligned Residues 353 % Identity 18% Template c3ruyB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ornithine aminotransferase; PDBTitle: crystal structure of the ornithine-oxo acid transaminase rocd from2 bacillus anthracis Resolution 2.65 Å

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		10	.	.	.	.	.	.	.	.	.	20		.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure													.															.													.	.	.
Query SS confidence													.															.													.	.	.
Query Sequence		A	L	D	A	R	R	A	A	D	A	L	.	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V
Query Conservation													.															.													.	.	.
Alig confidence													.															.													.	.	.							.																									.	.	.	.	.
Template Conservation																																																		.																									.	.	.	.	.
Template Sequence		E	L	T	D	T	Y	G	A	N	N	Y	H	P	L	P	I	V	I	S	K	A	E	G	V	W	V	E	D	P	E	G	N	R	Y	M	D	L	L	S	A	Y	S	A	V	N	Q	G	H	.	R	H	P	K	I	I	N	A	L	I	D	Q	A	N	R	V	T	L	T	S	R	A	F	H	.	.	.	.	.	S	D
Template Known Secondary structure										S	S					S								B	T					T	T							S	S					T		T	T		B	.	T												T	T	T		S				T	T	S		.	.	.	.	.		S
Template Predicted Secondary structure																																																		.																									.	.	.	.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.		.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80						.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.												.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Query Sequence		V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	.	.	.	.	.	.	.	.	.	.	.	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	.	.	.	.	.	.	.
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	G	P	W	Y	E	K	V	A	K	L	T	N	K	E	M	V	L	P	M	N	T	G	A	E	A	V	E	T	A	I	K	T	A	R	R	W	A	Y	D	V	K	K	V	E	A	N	R	A	E	I	I	V	C	E	D	N	F	H	G	R	T	M	G	A	V	S	M	S	S	N	E	E	Y	K	R	G	F	G
Template Known Secondary structure		S													T		S						S	S																			T	S				T	T								T	T					S	S					T	T		S		T	T	T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
				147	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure		.	.																																									.	.	.	.
Query SS confidence		.	.																																									.	.	.	.
Query Sequence		.	.	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C
Query Conservation		.	.																																									.	.	.	.
Alig confidence		.	.																																									.	.	.	.																						.
Template Conservation																																																																					.
Template Sequence		P	M	L	P	G	I	I	V	I	P	Y	G	D	L	E	A	L	K	A	A	I	T	P	N	T	A	A	F	I	L	E	P	I	Q	G	E	A	G	I	N	I	P	P	A	G	F	L	K	E	A	L	E	V	C	K	K	E	N	V	L	F	V	A	D	E	I	Q	.	T	G	L	G	R	T	G	K	V	F	A	C
Template Known Secondary structure		S			S	S						T	T											T	T								S	S	B	T	T	T	T	S	B				T	T												T	T								T	T	.	T	T	T	T	T	T	S	S	S	S	G	G
Template Predicted Secondary structure																																																																					.
Template SS confidence
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T
Query Conservation
Alig confidence																																								.	.	.	.	.
Template Conservation																																								.	.	.	.	.
Template Sequence		D	W	D	N	V	T	P	D	M	Y	I	L	G	A	L	G	G	G	V	F	P	I	S	C	A	A	A	N	R	D	I	L	G	V	F	E	P	G	.	.	.	.	.	S	H	G	S	T	F	G	G	N	P	L	A	C	A	V	S	I	A	A	L	E	V	L	E	E	E	K	L	T	E	R	S	L	Q	L	G	E
Template Known Secondary structure		G	G	G	T				S							T	T	T	T	T	S													T	T			T	T	.	.	.	.	.	S	S			S	S	T	T																		T	T
Template Predicted Secondary structure																																								.	.	.	.	.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.						280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
		301	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.
Query SS confidence																.	.	.
Query Sequence		R	F	R	A	G	V	Q	D	L	P	F	T	L	A	.	.	.	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L
Query Conservation																.	.	.
Alig confidence																.	.	.														.	.																			.	.	.	.	.	.	.
Template Conservation																																.	.																			.	.	.	.	.	.	.
Template Sequence		K	L	V	G	Q	L	K	E	I	D	N	P	M	I	T	E	V	R	G	K	G	L	F	I	G	I	E	L	N	E	.	.	P	A	R	P	Y	C	E	Q	L	K	A	A	G	L	L	C	K	E	.	.	.	.	.	.	.	T	H	E	N	V	I	R	I	A	P	P	L	V	I	S	E	E	D	L	E	W	A	F
Template Known Secondary structure								T	T				T	T								T	T							S	S	.	.		S											T						.	.	.	.	.	.	.		T	T	T								T	T
Template Predicted Secondary structure																																.	.																			.	.	.	.	.	.	.
Template SS confidence
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.			.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.								.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
		378	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	K	I	K	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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