Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 71 Aligned Residues 342 % Identity 13% Template c3qguB_ PDB info PDB header:transferase Chain: B: PDB Molecule:ll-diaminopimelate aminotransferase; PDBTitle: l,l-diaminopimelate aminotransferase from chalmydomonas reinhardtii Resolution 1.55 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.			.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure																																												.	.																						.	.
Query SS confidence																																												.	.																						.	.
Query Sequence		D	D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	.	.	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	.	.	S	R	A	L	L	F	I	S	G	F	A	A	N
Query Conservation																																												.	.																						.	.
Alig confidence															.																													.	.																						.	.
Template Conservation															.
Template Sequence		P	D	A	K	I	I	S	L	G	I	G	D	T	.	T	E	P	L	P	K	Y	I	A	D	A	M	A	K	A	A	A	G	L	A	T	R	E	G	Y	S	G	Y	G	A	E	Q	G	Q	G	A	L	R	E	A	V	A	S	T	F	Y	G	H	A	G	R	A	A	D	E	I	F	I	S	D	G	S	K	C	D	I
Template Known Secondary structure		T	T							S	S	S			.																			G	G	G	S						S	S		T	T															T	T	T	T			G	G	G					S
Template Predicted Secondary structure															.
Template SS confidence
		67	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.										.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.
Query SS confidence																																											.	.	.	.	.	.	.	.	.
Query Sequence		Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	.	.	.	.	.	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D
Query Conservation																																											.	.	.	.	.	.	.	.	.
Alig confidence		.																																									.	.	.	.	.	.	.	.	.
Template Conservation		.
Template Sequence		.	A	R	I	Q	M	M	F	G	S	K	P	T	V	A	V	Q	D	P	S	Y	P	V	Y	V	D	T	S	V	M	M	G	M	T	G	D	H	N	G	T	G	F	D	G	I	E	Y	M	V	C	N	P	D	N	H	F	F	P	D	L	S	K	A	K	R	T	D	I	I	F	F	C	S	P	N	N	P	T	G	A
Template Known Secondary structure		.									S	S	S							S			T									T	T		S			B		S	S	S	B	T	T								G	G	G	T	T				T	T	S					S						S	S		T	T	T
Template Predicted Secondary structure		.
Template SS confidence
			146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		184	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.			.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure				.	.	.																																												.	.															.	.	.
Query SS confidence				.	.	.																																												.	.															.	.	.
Query Sequence		S	A	.	.	.	P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	.	.	L	L	V	V	T	F	G	K	G	F	G	V	S	G	.	.	.	A	A	V	L	C	S	S	T	V	A	D	Y	L
Query Conservation				.	.	.																																												.	.															.	.	.
Alig confidence				.	.	.																																												.	.															.	.	.
Template Conservation
Template Sequence		A	A	T	R	A	Q	L	T	E	L	V	N	F	A	R	K	N	G	S	I	L	V	Y	D	A	A	Y	A	L	Y	I	S	N	P	D	C	P	K	T	I	Y	E	I	P	G	A	D	E	V	A	I	E	T	C	S	F	S	K	Y	A	G	F	T	G	V	R	L	G	W	T	V	V	P	K	A	L	K	Y	A	N
Template Known Secondary structure																			T								T	T	G	G	G				T	T	S		S	S	G	G	G	S	T	T	G	G	G	T								S	G	G	G	T		T	T										T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		256	.	.	.	260	.	.							.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.																																																								.
Query SS confidence									.	.	.	.	.	.																																																								.
Query Sequence		L	Q	F	A	R	H	L	.	.	.	.	.	.	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	S	A	I	Q	P	L	I	V	G	D	N
Query Conservation									.	.	.	.	.	.																																																								.
Alig confidence									.	.	.	.	.	.																																																								.
Template Conservation
Template Sequence		G	E	P	V	H	A	D	W	N	R	V	M	T	T	C	F	N	G	A	S	N	I	V	Q	A	G	G	L	A	C	L	Q	P	E	G	L	K	E	M	N	A	M	I	K	F	Y	K	E	N	A	Q	I	L	K	T	T	F	T	E	M	G	F	S	V	Y	G	G	D	D	A	P	Y	I	W	V	G	F	P	G	K
Template Known Secondary structure		S		B												S																T	S																												T	T						S	S	S	S	S							T	T	S
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
		329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence																										.													.	.
Template Conservation																										.													.	.
Template Sequence		P	S	W	D	V	F	A	E	I	L	E	R	C	N	I	V	T	T	P	G	S	G	Y	G	.	P	A	G	E	G	F	V	R	A	S	A	F	.	.	G	S	R	E	N	I	L	E	A	V	R	R	F	K	E	A
Template Known Secondary structure																					G	G	G	G		.	G	G	G	T	T								.	.	S
Template Predicted Secondary structure																										.													.	.
Template SS confidence
		385	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.		.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions