Job Description P12998 Confidence 99.97% Date Wed Jan 25 15:20:38 GMT 2012 Rank 160 Aligned Residues 355 % Identity 12% Template c3pplB_ PDB info PDB header:transferase Chain: B: PDB Molecule:aspartate aminotransferase; PDBTitle: crystal structure of an aspartate transaminase (ncgl0237, cgl0240)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.25 a3 resolution Resolution 1.25 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.					50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.
Query SS confidence																																																	.	.	.	.
Query Sequence		W	Q	E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	V	A	D	D	R	Q	Y	L	N	F	S	S	N	D	Y	.	.	.	.	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H
Query Conservation																																																	.	.	.	.
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	H	E	D	I	K	R	K	F	D	E	L	K	S	K	N	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	L	D	L	T	R	G	K	P	S	S	E	Q	L	D	F	A	D	E	L	L	A	L	P	G	K	G	D	F	K	A	A	D	G	T	D	V	R	N	Y	G	G
Template Known Secondary structure																T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T	G	G	G	G	G		S		T	T			B		T	T	S		B	T	T	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.																						.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.															.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.
Template Sequence		L	D	G	I	V	D	I	R	Q	I	W	A	D	L	L	G	.	.	V	P	V	E	Q	V	L	A	G	D	A	S	S	L	N	I	X	F	D	V	I	S	W	S	Y	I	F	G	N	N	D	S	V	Q	P	W	S	K	E	E	T	V	K	W	I	C	P	V	P	G	Y	D	R	H	F	S	I	T	E	R	F	G
Template Known Secondary structure		S	S														T	.	.	S		G	G	G					S	S																			T	T		S	S		G	G	G	S	S									S												T	T
Template Predicted Secondary structure																		.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		145	.	.	.	.	150	.	.	.					.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.		.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.																																		.	.	.							.
Query SS confidence											.	.	.	.																																		.	.	.							.
Query Sequence		S	Q	L	R	R	F	A	H	N	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	L	A	E	I	Q	Q	.	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G
Query Conservation											.	.	.	.																																		.	.	.							.
Alig confidence											.	.	.	.														.																				.	.	.							.
Template Conservation																												.
Template Sequence		F	E	X	I	S	V	P	X	N	E	D	G	P	D	X	D	A	V	E	E	L	V	K	N	P	Q	.	V	K	G	X	W	V	V	P	V	F	S	N	P	T	G	F	T	V	T	E	D	V	A	K	R	L	S	A	X	E	T	A	A	P	D	F	R	V	V	W	D	N	A	Y	A	V	H	T	L	T	D	E	F
Template Known Secondary structure											T	T											T	T	S	T	T	.									S	S		T	T	T																		S	S	T	T								T	T	T	T		B	S	S	S
Template Predicted Secondary structure																												.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		217	.	.	220	.	.	.	.	.								.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.														.	.
Query SS confidence											.	.	.	.	.	.	.														.	.
Query Sequence		R	G	S	C	W	L	Q	K	V	.	.	.	.	.	.	.	K	P	E	L	L	V	V	T	F	G	K	G	F	.	.	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E
Query Conservation											.	.	.	.	.	.	.														.	.
Alig confidence											.	.	.	.	.	.	.														.	.
Template Conservation
Template Sequence		P	E	V	I	D	I	V	G	L	G	E	A	A	G	N	P	N	R	F	W	A	F	T	S	T	S	K	I	T	L	A	G	A	G	V	S	F	F	L	T	S	A	E	N	R	K	W	Y	T	G	H	A	G	I	R	G	I	G	P	N	K	V	N	Q	L	A	H	A	R	Y	F	G	D	A	E	G	V	R	A	V
Template Known Secondary structure														T	T		T	T								S	T	T	T	S		T	T	T	S																							S																S
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.							.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.				.	.	.
Predicted Secondary structure																							.	.	.	.	.	.																																																.	.	.
Query SS confidence																							.	.	.	.	.	.																																																.	.	.
Query Sequence		G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	.	.	.	.	.	.	L	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	.	.	.	G	T	A
Query Conservation																							.	.	.	.	.	.																																																.	.	.
Alig confidence																							.	.	.	.	.	.																						.																										.	.	.
Template Conservation																																																		.
Template Sequence		X	R	K	H	A	A	S	L	A	P	K	F	N	K	V	L	E	I	L	D	S	R	L	A	E	Y	G	V	A	Q	W	T	V	P	A	G	G	Y	F	I	S	L	D	V	V	P	G	T	.	A	S	R	V	A	E	L	A	K	E	A	G	I	A	L	T	G	A	G	S	S	Y	P	L	R	Q	D	P	E	N	K
Template Known Secondary structure																									G	G	G	T								S	B	S	S							S	T	T		.											T	T						T	T	T	T	S	G	G	G			T	T	S
Template Predicted Secondary structure																																																		.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence									.
Template Conservation									.
Template Sequence		N	L	R	L	A	P	S	.	L	P	P	V	E	E	L	E	V	A	X	D	G	V	A	T	C
Template Known Secondary structure								S	.	S	S
Template Predicted Secondary structure									.
Template SS confidence
		392	.	.	.	.	.	.		.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions