Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 33 Aligned Residues 366 % Identity 17% Template c3oksB_ PDB info PDB header:transferase Chain: B: PDB Molecule:4-aminobutyrate transaminase; PDBTitle: crystal structure of 4-aminobutyrate transaminase from mycobacterium2 smegmatis Resolution 1.80 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.																.	.	.
Query SS confidence																																	.																.	.	.
Query Sequence		Q	E	K	I	N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	N	D	Y	.	.	.	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V
Query Conservation																																	.																.	.	.
Alig confidence																																	.																.	.	.				.
Template Conservation																																																							.
Template Sequence		Q	A	L	I	D	R	K	G	T	A	V	A	R	G	V	G	T	T	M	P	V	Y	A	V	R	A	G	G	G	I	V	E	D	V	D	G	N	R	L	I	D	L	G	S	G	I	A	V	T	T	V	G	N	.	S	A	P	K	V	V	E	A	V	R	S	Q	V	G	D	F	T	H	T	C	F	M	V	T	P	Y
Template Known Secondary structure												S		T	T	S			S	S	S	S							T	T					T	T	S						S	S					T		T	T		T	.	T													T	T		S			T	T	T	T	S
Template Predicted Secondary structure																																																							.
Template SS confidence
		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																										.	.	.																															.	.	.	.	.	.	.
Query SS confidence																																										.	.	.																															.	.	.	.	.	.	.
Query Sequence		S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	.	.	.	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	.	.	.	.	.	.	.
Query Conservation																																										.	.	.																															.	.	.	.	.	.	.
Alig confidence													.																													.	.	.																															.	.	.	.	.	.	.
Template Conservation													.
Template Sequence		E	G	Y	V	A	V	C	E	Q	L	N	.	R	L	T	P	V	R	G	D	K	R	S	A	L	F	N	S	G	S	E	A	V	E	N	A	V	K	I	A	R	S	H	T	H	K	P	A	V	V	A	F	D	H	A	Y	H	G	R	T	N	L	T	M	A	L	T	A	K	V	M	P	Y	K	D	G	F	G	P	F
Template Known Secondary structure													.			S	S			S	S							S	S																									T	T					S	S											T	T	T	T	T	T			S
Template Predicted Secondary structure													.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110		.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
																										150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	.	.	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																						.	.	.	.
Template Conservation
Template Sequence		A	P	E	I	Y	R	A	P	L	S	Y	P	F	R	D	A	E	F	G	K	E	L	A	T	D	G	E	L	A	A	K	R	A	I	T	V	I	D	K	Q	I	G	A	D	N	L	A	A	V	V	I	E	P	I	Q	G	E	G	G	F	I	V	P	A	D	G	F	L	P	T	L	L	D	W	C	R	K	N	D	V
Template Known Secondary structure			S	S													G	G	G						T																	T		G	G	G								S	S	B	T	T	T	T		B				T	T												T	T
Template Predicted Secondary structure
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S
Query Conservation
Alig confidence											.																										.																								.	.	.	.	.
Template Conservation											.																										.																								.	.	.	.	.
Template Sequence		V	F	I	A	D	E	V	Q	T	.	G	F	A	R	T	G	A	M	F	A	C	E	H	E	G	I	D	P	D	L	I	V	T	A	G	.	I	A	G	G	L	P	L	S	A	V	T	G	R	A	E	I	M	D	S	P	H	V	S	.	.	.	.	.	G	L	G	G	T	Y	G	G	N	P	I	A	C	A	A	A
Template Known Secondary structure								T	T	T	.	T	T	T	T	T	S	S	S	S	G	G	G	T	T	T				S							.	T	T	T	T	S	S												T		S		T	T	.	.	.	.	.	S	S			S	S	S	S
Template Predicted Secondary structure											.																										.																								.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.		.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.						.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.						310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.								.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.																	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.																	.	.	.	.	.	.	.
Query Sequence		L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	.	.	.	.	.	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	.	.	.	.	.	.	.	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A
Query Conservation																																.	.	.	.	.																	.	.	.	.	.	.	.
Alig confidence																																.	.	.	.	.																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	A	T	I	E	T	I	E	S	E	G	L	V	A	R	A	Q	Q	I	E	K	I	M	K	D	R	L	G	R	L	Q	A	E	D	D	R	I	G	D	V	R	G	R	G	A	M	I	A	M	E	L	V	K	A	G	T	T	E	P	D	A	D	L	T	K	A	L	C	A	G	A	H	A	A	G	V	I	V	L	S
Template Known Secondary structure											T	T																								T	T								T	T							B	S	T	T	S			B															T	T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.
		348	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence			.	.	.	.	.
Template Conservation			.	.	.	.	.
Template Sequence		C	.	.	.	.	.	G	T	Y	G	N	V	V	R	F	L	P	P	L	S	I	G	D	D	L	L	N	E	G	L	D	V	L	E	E	V
Template Known Secondary structure			.	.	.	.	.		T	T	S									T	T
Template Predicted Secondary structure			.	.	.	.	.
Template SS confidence
		413						.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.

No model constructed - rank, confidence too low