Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 29 Aligned Residues 347 % Identity 16% Template c3nuiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:pyruvate transaminase; PDBTitle: crystal structure of omega-transferase from vibrio fluvialis js17 Resolution 2.00 Å

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		24	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.													.	.	.
Query SS confidence													.													.	.	.
Query Sequence		Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y
Query Conservation													.													.	.	.
Alig confidence													.													.	.	.							.																				.	.	.
Template Conservation																																			.																				.	.	.
Template Sequence		V	V	V	T	H	G	E	G	P	Y	I	V	D	V	N	G	R	R	Y	L	D	A	N	S	G	L	W	N	M	V	A	G	F	.	D	H	K	G	L	I	D	A	A	K	A	Q	Y	E	R	F	P	G	Y	.	.	.	H	A	F	F	G	R	M	S	D	Q	T	V	M	L	S	E	K	L	V	E	V	S	P	F
Template Known Secondary structure									T	T					T	T							T	T					T		T	T		S	.																				.	.	.			B	T	T	B																S	S
Template Predicted Secondary structure																																			.																				.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
				100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																					.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.																					.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	.	.	.	.	.	.	.	.	.	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.																					.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																					.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	S	G	R	V	F	Y	T	N	S	G	S	E	A	N	D	T	M	V	K	M	L	W	F	L	H	A	A	E	G	K	P	Q	K	R	K	I	L	T	R	W	N	A	Y	H	G	V	T	A	V	S	A	S	M	T	G	K	P	Y	N	S	V	F	G	L	P	L	P	G	F	V	H	L	T	C	P	H	Y	W	R
Template Known Secondary structure		S	S							S	S																			T	T		T	T								T	T					S	S							S			G	G	G	G	G	G	T		S		T	T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
											149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.		.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.																			.																					.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.																			.																					.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	.	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E
Query Conservation		.	.	.	.	.	.	.	.	.																			.																					.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																			.																					.	.	.	.																							.
Template Conservation																																																																												.
Template Sequence		Y	G	E	E	G	E	T	E	E	Q	F	V	A	R	L	A	R	E	L	E	E	T	I	Q	R	E	G	A	D	T	I	A	G	F	F	A	E	P	V	M	G	A	G	G	V	I	P	P	A	K	G	Y	F	Q	A	I	L	P	I	L	R	K	Y	D	I	P	V	I	S	D	E	V	I	C	.	G	F	G	R	T
Template Known Secondary structure					T	T																							G	G	G								S	S	B	S	T	T	T	S	B				T	T												T	T								T	T	T	.	T	T	T	T	T
Template Predicted Secondary structure																																																																												.
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260		.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260			.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																												.																					.	.
Query SS confidence																												.																					.	.
Query Sequence		Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	.	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	.	.	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R
Query Conservation																												.																					.	.
Alig confidence																												.																					.	.
Template Conservation
Template Sequence		G	N	T	W	G	C	V	T	Y	D	F	T	P	D	A	I	I	S	S	K	N	L	T	A	G	F	F	P	M	G	A	V	I	L	G	P	E	L	S	K	R	L	E	T	A	I	E	A	I	E	E	F	P	H	G	F	T	A	S	G	H	P	V	G	C	A	I	A	L	K	A	I	D	V	V	M	N	E	G	L
Template Known Secondary structure		S	S	S	S					T	T				S						G	G	G	G	T	T	S	S																							T	S			T	T																							S	S
Template Predicted Secondary structure
Template SS confidence
		266	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.
		292	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.					310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330												.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	.	.	.	.	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	.	.	.	.	.	.	.	.	.	.	.	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G
Query Conservation																				.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.
Template Conservation																																																																											.	.	.	.	.	.	.
Template Sequence		A	E	N	V	R	R	L	A	P	R	F	E	E	R	L	K	H	I	A	E	R	P	N	I	G	E	Y	R	G	I	G	F	M	W	A	L	E	A	V	K	D	K	A	S	K	T	P	F	D	G	N	L	S	V	S	E	R	I	A	N	T	C	T	D	L	G	L	I	C	R	P	L	G	.	.	.	.	.	.	.
Template Known Secondary structure																				T	T	S	T	T								T	T								S	B	T	T	T	T	B				G	G	G													T	T							T	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																											.	.	.	.	.	.	.
Template SS confidence
		346	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.
		357	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence		.
Template Conservation		.
Template Sequence		.	Q	S	V	V	L	C	P	P	F	I	L	T	E	A	Q	M	D	E	M	F	D	K	L	E	K	A
Template Known Secondary structure		.	T								T	T
Template Predicted Secondary structure		.
Template SS confidence
			419	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions