Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 117 Aligned Residues 327 % Identity 16% Template c3n0lA_ PDB info PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni Resolution 1.80 Å

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		39	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.
Predicted Secondary structure							.																								.																	.	.	.																							.
Query SS confidence							.																								.																	.	.	.																							.
Query Sequence		R	Q	Y	L	N	.	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	.	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	.	.	.	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	.	F	I	S	G	F	A	A	N
Query Conservation							.																								.																	.	.	.																							.
Alig confidence							.									.	.	.	.												.																	.	.	.																							.
Template Conservation																.	.	.	.
Template Sequence		C	E	G	L	E	X	I	A	S	E	N	F	T	L	.	.	.	.	P	E	V	X	E	V	X	G	S	I	L	T	N	K	Y	A	E	G	Y	P	G	K	R	Y	Y	G	G	C	E	F	V	D	E	I	E	T	L	A	I	E	R	C	K	K	L	F	N	C	K	F	A	N	V	Q	P	N	S	G	S	Q	A	N
Template Known Secondary structure				S					T	T						.	.	.	.								T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.					.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure																		.
Query SS confidence																		.
Query Sequence		Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	.	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	L	A	E	I	Q
Query Conservation																		.
Alig confidence																		.																	.	.	.	.	.	.	.																						.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.																						.	.	.	.
Template Sequence		Q	G	V	Y	A	A	L	I	N	P	G	D	K	I	L	G	X	D	L	K	X	Y	E	S	C	F	Y	G	V	E	L	D	G	.	.	.	.	.	.	.	R	I	D	Y	E	K	V	R	E	I	A	K	K	E	K	P	K	L	I	V	C	.	.	.	.	G	A	S	A	Y	A	R	V	I	D	F	A	K	F	R
Template Known Secondary structure									S		T	T											S									T	T	S	.	.	.	.	.	.	.	S																S					.	.	.	.			S	S			S
Template Predicted Secondary structure																																			.	.	.	.	.	.	.																						.	.	.	.
Template SS confidence
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130								.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.					.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence		Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	.	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P
Query Conservation																																																	.
Alig confidence																																	.	.	.														.
Template Conservation																																	.	.	.
Template Sequence		E	I	A	D	E	I	G	A	Y	L	F	A	D	I	A	H	I	A	G	L	V	V	A	G	E	H	P	S	P	F	P	.	.	.	Y	A	H	V	V	S	S	T	T	H	K	T	L	R	G	P	R	G	G	I	I	X	T	N	D	E	E	L	A	K	K	I	N	S	A	I	F	P	G	I	Q	G	G	P	L	X
Template Known Secondary structure								T								T	T	T						T	T	S	S				T	T	.	.	.	T		S						S	S	T	T	T		S		S							S													T	T	T	T		S	S
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.				.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		271	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.																.
Query SS confidence																																														.	.																.
Query Sequence		A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	.	.	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	.	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A
Query Conservation																																														.	.																.
Alig confidence																																														.	.																.
Template Conservation
Template Sequence		H	V	I	A	A	K	A	V	G	F	K	F	N	L	S	D	E	W	K	V	Y	A	K	Q	V	R	T	N	A	Q	V	L	A	N	V	L	X	D	R	K	F	K	L	V	S	D	G	T	D	N	H	L	V	L	X	S	F	L	D	R	E	F	S	G	K	D	A	D	L	A	L	G	N	A	G	I	T	A	N	K
Template Known Secondary structure															T	S																								T	T				G	G	G	S		S	S	S							T	T	S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		348	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure											.	.	.										.	.	.	.
Query SS confidence											.	.	.										.	.	.	.
Query Sequence		I	R	P	P	T	V	P	A	G	.	.	.	T	A	R	L	R	L	T	L	T	.	.	.	.	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation											.	.	.										.	.	.	.
Alig confidence											.	.	.										.	.	.	.
Template Conservation
Template Sequence		N	T	V	P	G	E	I	R	S	P	F	I	T	S	G	L	R	L	G	T	P	A	L	T	A	R	G	F	K	E	K	E	X	E	I	V	S	N	Y	I	A	D	I
Template Known Secondary structure					T	T			S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions