Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 40 Aligned Residues 343 % Identity 16% Template c3l44A_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase 1; PDBTitle: crystal structure of bacillus anthracis heml-1, glutamate semialdehyde2 aminotransferase Resolution 2.05 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																.													.	.	.
Query SS confidence																.													.	.	.
Query Sequence		R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W
Query Conservation																.													.	.	.
Alig confidence																.													.	.	.						.																							.	.	.	.	.	.	.
Template Conservation																																					.																							.	.	.	.	.	.	.
Template Sequence		G	A	P	I	A	X	E	R	G	K	G	A	Y	F	W	D	V	D	G	N	K	Y	I	D	Y	L	A	A	Y	G	P	I	I	T	G	.	H	A	H	P	H	I	T	K	A	I	T	T	A	A	E	N	G	V	L	Y	G	T	.	.	.	.	.	.	.	P	T	A	L	E	V	K	F	A	K	X	L	K	E	A
Template Known Secondary structure		S										B	T					T	T									G	G	G	T	T		S	S		.	B	T																S			S	S	.	.	.	.	.	.	.
Template Predicted Secondary structure																																					.																							.	.	.	.	.	.	.
Template SS confidence
		36	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70		.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.								.	.	.	.	.	.	.	100	.	.	.	.	.	.	.
		97	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.													.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure					.																		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence					.																		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	Y	.	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	.	.	.	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	F	A	H	N	D	V	T	H	L	A	R
Query Conservation					.																		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence					.																		.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	P	A	L	D	K	V	R	F	V	N	S	G	T	E	A	V	X	T	T	I	R	V	A	R	A	Y	T	G	R	T	K	I	X	K	F	A	G	C	Y	H	G	H	S	D	L	V	L	V	A	L	G	T	P	D	S	A	G	V	P	Q	S	I	A	Q	E	V	I	T	V	P	F	N	N	V	E	T	L	K	E
Template Known Secondary structure			T	T		S						S	S																									T	T					S	S	G	G	G	G	B					B	S	S	T	T							T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		108	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																												.	.	.	.
Query SS confidence																												.	.	.	.
Query Sequence		L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K
Query Conservation																												.	.	.	.
Alig confidence																												.	.	.	.																									.	.																							.
Template Conservation																																																								.	.																							.
Template Sequence		A	L	D	K	W	G	H	E	V	A	A	I	L	V	E	P	I	V	G	N	F	G	I	V	E	P	K	P	G	F	L	E	K	V	N	E	L	V	H	E	A	G	A	L	V	I	Y	D	E	V	I	T	A	F	.	.	R	F	X	Y	G	G	A	Q	D	L	L	G	V	T	P	D	L	T	A	L	G	V	.	I
Template Known Secondary structure							G	G	G								S	S	B		T	T	S		B				T	T											T	T	T								T	T	T	T	T	.	.	T	S	S	S	S							T				S							.	T
Template Predicted Secondary structure																																																								.	.																							.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.			.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270		.
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.			.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.
Predicted Secondary structure																																																.	.																															.
Query SS confidence																																																.	.																															.
Query Sequence		G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	.	.	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	.	L
Query Conservation																																																.	.																															.
Alig confidence																																																.	.																															.
Template Conservation
Template Sequence		G	G	G	L	P	I	G	A	Y	G	G	K	K	E	I	X	E	Q	V	A	P	L	G	P	A	Y	Q	A	G	T	X	A	G	N	P	A	S	X	A	S	G	I	A	C	L	E	V	L	Q	Q	E	G	L	Y	E	K	L	D	E	L	G	A	T	L	E	K	G	I	L	E	Q	A	A	K	H	N	I	D	I	T
Template Known Secondary structure		T	T	T	S	S												T	T	B	T	T	T	S	S	B					T	T	T	T																T	S	T	T																							T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.														.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																																				.	.	.	.	.	.	.	.	.
Template Sequence		L	N	R	L	K	G	A	L	T	V	Y	F	T	T	N	T	I	E	D	Y	D	A	A	Q	D	T	D	G	E	X	F	G	K	F	F	K	L	X	L	Q	E	G	V	N	L	A	P	S	K	Y	.	.	.	.	.	.	.	.	.	E	A	W	F	L	T	T	E	H	T	K	E	D	I	E	Y	T	I	E	A	V
Template Known Secondary structure						T	T							S	S	S				S							S															T	T					S	S	T	T	.	.	.	.	.	.	.	.	.							T	T
Template Predicted Secondary structure																																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.										.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		381	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	A
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		424	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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