Phyre 2 alignment of P12998 with c3jtxB

Job Description P12998
Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012

Rank 66 Aligned Residues 336

% Identity 10% Template c3jtxB_

PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase (np_283882.1) from neisseria2 meningitidis z2491 at 1.91 a resolution

Resolution 1.91 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.							.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																																																															.	.	.	.	.	.
Query SS confidence																																																															.	.	.	.	.	.
Query Sequence	D	D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	.	.	.	.	.	.	Y	S	R	A	L	L	F	I	S	G	F	A
Query Conservation																																																															.	.	.	.	.	.
Alig confidence														.																				.	.	.	.																										.	.	.	.	.	.
Template Conservation														.																				.	.	.	.
Template Sequence	E	G	X	E	A	V	P	L	H	I	G	E	P	.	K	H	P	T	P	K	V	I	T	D	A	L	T	A	S	L	H	E	L	.	.	.	.	E	K	Y	P	L	T	A	G	L	P	E	L	R	Q	A	C	A	N	W	L	K	R	R	Y	D	G	L	T	V	D	A	D	N	E	I	L	P	V	L	G	S	R	E
Template Known Secondary structure	T	T						T	T			S		.		S													T	G	G	G	G	.	.	.	.	G	S				T	T																	T	T	T					T	T	T	S					S	S
Template Predicted Secondary structure														.																				.	.	.	.
Template SS confidence
	27	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.					.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.

	111	.	.	.	.	.	.	.	.	120	.				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure												.	.	.																																				.	.	.
Query SS confidence												.	.	.																																				.	.	.
Query Sequence	A	N	Q	A	V	I	A	A	M	M	A	.	.	.	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	.	.	.	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S
Query Conservation												.	.	.																																				.	.	.
Alig confidence												.	.	.																																				.	.	.
Template Conservation
Template Sequence	A	L	F	S	F	V	Q	T	V	L	N	P	V	G	I	K	P	A	I	V	S	P	N	P	F	Y	Q	I	Y	E	G	A	T	L	L	G	G	G	E	I	H	F	A	N	C	P	A	P	S	F	N	P	D	W	R	S	I	S	E	E	V	W	K	R	T	K	L	V	F	V	C	S	P	N	N	P	S	G	S	V
Template Known Secondary structure																								S												T	T										T	T	T					G	G	G	S						T	T								S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.

	185	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.							.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.
Predicted Secondary structure			.	.	.																																						.	.	.	.	.	.																			.	.
Query SS confidence			.	.	.																																						.	.	.	.	.	.																			.	.
Query Sequence	A	P	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	.	.	.	.	.	.	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	.	.	G	A	A	V	L	C	S	S	T	V	A	D
Query Conservation			.	.	.																																						.	.	.	.	.	.																			.	.
Alig confidence			.	.	.																																						.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence	L	D	L	D	G	W	K	E	V	F	D	L	Q	D	K	Y	G	F	I	I	A	S	D	E	C	Y	S	E	I	Y	F	D	G	N	K	P	L	G	C	L	Q	A	A	A	Q	L	G	R	S	R	Q	K	L	L	X	F	T	S	L	S	R	S	N	V	P	G	L	R	S	G	F	V	A	G	D	A	E	L	L	K
Template Known Secondary structure																									T	T	T	T			S	T	T													T	T				T	T											S		G	G	G
Template Predicted Secondary structure
Template SS confidence
	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.

	254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q
Query Conservation
Alig confidence						.	.	.	.
Template Conservation						.	.	.	.
Template Sequence	N	F	L	L	Y	.	.	.	.	R	T	Y	H	G	S	A	X	S	I	P	V	Q	R	A	S	I	A	A	W	D	D	E	Q	H	V	I	D	N	R	R	L	Y	Q	E	K	F	E	R	V	I	P	I	L	Q	Q	V	F	D	V	K	L	P	D	A	S	F	Y	I	W	L	K	V	P	D	G	D	D	L	A	F
Template Known Secondary structure						.	.	.	.					T																																								T	T	T	S						S	S	S	S							T	T	S
Template Predicted Secondary structure						.	.	.	.
Template SS confidence
	265	.	.	.	.					270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340

	334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.						.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																									.	.	.	.	.
Query SS confidence																									.	.	.	.	.
Query Sequence	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	.	.	.	.	.	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation																									.	.	.	.	.
Alig confidence																									.	.	.	.	.									.	.
Template Conservation																																						.	.
Template Sequence	A	R	N	L	W	Q	K	A	A	I	Q	V	L	P	G	R	F	L	A	R	D	T	E	Q	G	N	P	G	E	G	Y	V	R	I	A	L	V	.	.	A	D	V	A	T	C	V	K	A	A	E	D	I	V	S	L
Template Known Secondary structure															G	G	G	G	S			B	T	T	B		T	T	T	T								.	.	S
Template Predicted Secondary structure																																						.	.
Template SS confidence
	341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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