Job Description P12998 Confidence 99.96% Date Wed Jan 25 15:20:38 GMT 2012 Rank 180 Aligned Residues 302 % Identity 11% Template c3ihjA_ PDB info PDB header:transferase Chain: A: PDB Molecule:alanine aminotransferase 2; PDBTitle: human alanine aminotransferase 2 in complex with plp Resolution 2.30 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.						.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.																												.	.	.	.
Query SS confidence																				.	.	.	.	.																												.	.	.	.
Query Sequence		V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	.	.	.	.	.	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	E	.	.	.	.	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R
Query Conservation																				.	.	.	.	.																												.	.	.	.
Alig confidence																				.	.	.	.	.																												.	.	.	.
Template Conservation
Template Sequence		S	Q	G	V	N	C	I	R	E	D	V	A	A	Y	I	T	R	R	D	G	G	V	P	A	D	P	D	N	I	Y	L	T	T	G	A	S	D	G	I	S	T	I	L	K	I	L	V	S	G	G	G	K	S	R	T	G	V	M	I	P	I	P	Q	Y	P	L	Y	S	A	V	I	S	E	L	D	A	I	Q	V	N
Template Known Secondary structure				S																T	T	T					G	G	G					S	S																	G	G	G	S								S			T									T	T
Template Predicted Secondary structure
Template SS confidence
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
		150	.								.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.				.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.														.	.																									.	.	.
Query SS confidence				.	.	.	.	.	.	.														.	.																									.	.	.
Query Sequence		F	A	.	.	.	.	.	.	.	H	N	D	V	T	H	L	A	R	L	L	A	S	.	.	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	L	A	.	.	.	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R
Query Conservation				.	.	.	.	.	.	.														.	.																									.	.	.
Alig confidence				.	.	.	.	.	.	.														.	.																									.	.	.
Template Conservation
Template Sequence		Y	Y	L	D	E	E	N	C	W	A	L	N	V	N	E	L	R	R	A	V	Q	E	A	K	D	H	C	D	P	K	V	L	C	I	I	N	P	G	N	P	T	G	Q	V	Q	S	R	K	C	I	E	D	V	I	H	F	A	W	E	E	K	L	F	L	L	A	D	E	V	Y	Q	D	N	V	Y	S	P	D	C	R
Template Known Secondary structure					B	G	G	G	T	T	B														T	T	T	S									S	S		T	T	T																				T								T	T	T	T		B			T	T
Template Predicted Secondary structure
Template SS confidence
		233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
		218											.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.
Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																					.					.	.	.																																									.
Query SS confidence			.	.	.	.	.	.	.	.	.	.																					.					.	.	.																																									.
Query Sequence		G	.	.	.	.	.	.	.	.	.	.	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	.	G	V	S	G	.	.	.	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	.
Query Conservation			.	.	.	.	.	.	.	.	.	.																					.					.	.	.																																									.
Alig confidence			.	.	.	.	.	.	.	.	.	.																					.					.	.	.																																									.
Template Conservation
Template Sequence		F	H	S	F	K	K	V	L	Y	E	M	G	P	E	Y	S	S	N	V	E	L	A	S	F	H	S	T	S	K	G	Y	M	G	E	C	G	Y	R	G	G	Y	M	E	V	I	N	L	H	P	E	I	K	G	Q	L	V	K	L	L	S	V	R	L	C	P	P	V	S	G	Q	A	A	M	D	I	V	V	N	P	P
Template Known Secondary structure												T						T	T									S	S	S	S	T	T			S	S	S									S																S															T
Template Predicted Secondary structure
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.
										283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.													.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure		.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	.	P	F	T	L	A	D	S	C	.	S	A	I	Q	P	L	I	V	G	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q
Query Conservation		.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.																												.									.										.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	A	G	E	E	S	F	E	Q	F	S	R	E	K	E	S	V	L	G	N	L	A	K	K	A	K	L	T	E	D	L	F	N	Q	V	P	G	I	H	C	N	P	L	Q	G	A	M	Y	A	F	P	R	I	F	I	P	A	K	A	V	E	A	A	Q	A	H	Q	M	A	P	D	M	F	Y	C	M	K	L	L	E
Template Known Secondary structure			T	T	S	T	T																												T	S	T	T								B	S	S																			T	T	S
Template Predicted Secondary structure
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.
		341		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure			.
Query SS confidence			.
Query Sequence		Q	.	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G
Query Conservation			.
Alig confidence			.																									.	.
Template Conservation																												.	.
Template Sequence		E	T	G	I	C	V	V	P	G	S	G	F	G	Q	R	E	G	T	Y	H	F	R	M	T	I	L	.	.	P	P	V	E	K	L	K	T	V	L	Q	K	V	K	D
Template Known Secondary structure					B					G	G	G	T				T	T			B							.	.	S
Template Predicted Secondary structure																												.	.
Template SS confidence
		473	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.			.	500	.	.	.	.	.	.	.	.	.	510	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions