Job Description P12998 Confidence 99.97% Date Wed Jan 25 15:20:38 GMT 2012 Rank 149 Aligned Residues 339 % Identity 13% Template c3if2B_ PDB info PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of putative amino-acid aminotransferase2 (yp_265399.1) from psychrobacter arcticum 273-4 at 2.50 a resolution Resolution 2.50 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.														.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Query Sequence		D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	.	.	.	.	S
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Alig confidence														.	.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.
Template Conservation														.	.	.
Template Sequence		D	Q	P	V	N	X	L	G	G	G	N	P	.	.	.	A	K	I	D	A	V	N	E	L	F	L	E	T	Y	K	A	L	G	N	D	N	D	T	G	K	A	N	S	S	A	I	I	S	X	A	N	Y	S	N	P	Q	G	D	S	A	F	I	D	A	L	V	G	F	F	N	R	H	Y	D	W	N	L	T	S	E
Template Known Secondary structure		S	S						S					.	.	.																					S		T	T		S										S				T	T																							G	G
Template Predicted Secondary structure														.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.				.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.									.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140							.	.	.	.	.	.	.	.	.	150	.	.											.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Query Sequence		R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	.	.	.	.	.	.	.	.	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	.	.	.	.	.	.	S	L	S	P	S	Q	L	R	R	F	A	H	.	.	.	.	.	.	.	.	.	.	N	D	V	T
Query Conservation																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.																			.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	I	A	L	T	N	G	S	Q	N	A	F	F	Y	L	F	N	L	F	G	G	A	F	V	N	E	K	S	V	D	K	S	I	L	L	P	L	T	P	E	Y	I	G	Y	S	D	V	H	V	E	G	Q	H	F	A	A	V	L	P	H	I	D	E	V	T	H	D	G	E	E	G	F	F	K	Y	R	V	D	F	E
Template Known Secondary structure		G					S	S													S																S	S	S	S			G	G	G	T	T			S	S	S																T	T
Template Predicted Secondary structure
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																.	.	.
Query SS confidence																																.	.	.
Query Sequence		H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T
Query Conservation																																.	.	.
Alig confidence																																.	.	.																																							.
Template Conservation																																																																									.
Template Sequence		A	L	E	N	L	P	A	L	K	E	G	R	I	G	A	I	C	C	S	R	P	T	N	P	T	G	N	V	L	T	D	E	E	X	A	H	L	A	E	I	A	K	R	Y	D	I	P	L	I	I	D	N	A	Y	G	X	P	F	P	N	I	I	Y	S	D	A	H	L	N	W	D	.	N	N	T	I	L	C	F	S
Template Known Secondary structure					T						T	T									S	S		T	T	T																			T	T								T	T		T	T	T	T			B		S								.	T	T
Template Predicted Secondary structure																																																																									.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.
		234	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.																																																																				.
Query SS confidence											.	.	.																																																																				.
Query Sequence		F	G	K	G	F	G	V	S	G	.	.	.	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	.
Query Conservation											.	.	.																																																																				.
Alig confidence					.						.	.	.																																																																				.
Template Conservation					.
Template Sequence		L	S	K	.	I	G	L	P	G	X	R	T	G	I	I	V	A	D	A	K	V	I	E	A	V	S	A	X	N	A	V	V	N	L	A	P	T	R	F	G	A	A	I	A	T	P	L	V	A	N	D	R	I	K	Q	L	S	D	N	E	I	K	P	F	Y	Q	K	Q	A	T	L	A	V	K	L	L	K	Q	A	L
Template Known Secondary structure		S	G	G	.	G	T		G	G	G																							T	S	S															T	S									T																				S
Template Predicted Secondary structure					.
Template SS confidence
		273	.	.		.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.
					310	.	.	.	.	.	.	.		.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.								.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.									.											.																											.	.	.	.	.	.	.
Query SS confidence		.	.	.									.											.																											.	.	.	.	.	.	.
Query Sequence		.	.	.	P	F	T	L	A	D	S	C	.	S	A	I	Q	P	L	I	V	G	D	.	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	.	.	.	.	.	.	.	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L
Query Conservation		.	.	.									.											.																											.	.	.	.	.	.	.
Alig confidence		.	.	.									.											.																											.	.	.	.	.	.	.														.	.
Template Conservation																																																																							.	.
Template Sequence		G	D	Y	P	L	X	I	H	K	P	E	G	A	I	F	L	W	L	W	F	K	D	L	P	I	S	T	L	D	L	Y	E	R	L	K	A	K	G	T	L	I	V	P	S	E	Y	F	F	P	G	V	D	V	S	D	Y	Q	H	A	H	E	C	I	R	X	S	I	A	A	.	.	D	E	Q	T	L	I	D	G	I
Template Known Secondary structure		S	S	S	S								B	S	S							T	T		S	S												T	T						G	G	G	S		T	T	S			T	T		G	G	G	G	S						S		S	.	.
Template Predicted Secondary structure																																																																							.	.
Template SS confidence
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.
		378	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	V	L	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	V	I	G	E	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		430	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions