Phyre 2 alignment of P12998 with c3hvyC

Job Description P12998
Confidence 99.94% Date Wed Jan 25 15:20:38 GMT 2012

Rank 216 Aligned Residues 275

% Identity 13% Template c3hvyC_

PDB info PDB header:lyase Chain: C: PDB Molecule:cystathionine beta-lyase family protein, ynbb b.subtilis PDBTitle: crystal structure of putative cystathionine beta-lyase involved in2 aluminum resistance (np_348457.1) from clostridium acetobutylicum at3 2.00 a resolution

Resolution 2.00 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	.	.	.	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	D	R
Query Conservation																																																				.	.	.
Alig confidence																														.																						.	.	.
Template Conservation																														.
Template Sequence	N	Q	L	K	V	L	K	A	F	Q	E	E	R	I	S	E	S	H	F	T	N	S	S	G	Y	G	Y	N	D	.	I	G	R	D	S	L	D	R	V	Y	A	N	I	F	N	T	E	S	A	F	V	R	P	H	F	V	N	G	T	H	A	I	G	A	A	L	F	G	N	L	R	P	N	D	T	X	X	S	I	C
Template Known Secondary structure												T	T			G	G	G	S					T	T		T	T		.															T		S						T	T		S	S												T			T	T						S	S
Template Predicted Secondary structure																														.
Template SS confidence
	44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

	131	.	.	.	.	.	.	.	.	140													.	.	.	.	.	.	.	.	.	150	.		.	.	.	.	.	.	.	.	160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.					.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.												.															.	.													.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.												.															.	.													.	.	.	.
Query Sequence	L	S	H	A	S	L	L	E	A	A	.	.	.	.	.	.	.	.	.	.	.	.	S	L	S	P	S	Q	L	R	R	F	A	.	H	N	D	V	T	H	L	A	R	L	L	A	S	P	.	.	C	P	G	Q	Q	M	V	V	T	E	G	V	.	.	.	.	F	S	M	D	G	D	S	A	P	L	A	E	I	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.												.															.	.													.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.												.															.	.													.	.	.	.
Template Conservation
Template Sequence	G	X	P	Y	D	T	L	H	D	I	I	G	X	D	D	S	K	K	V	G	S	L	R	E	Y	G	V	K	Y	K	X	V	D	L	K	D	G	K	V	D	I	N	T	V	K	E	E	L	K	K	D	D	S	I	K	L	I	H	I	Q	R	S	T	G	Y	G	W	R	K	S	L	R	I	A	E	I	A	E	I	I
Template Known Secondary structure	S	S			G	G	G					T			T	T			S			T	G	G	G	T									B	T	T	B														T	T								S	S			S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

	192	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.					240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.
Predicted Secondary structure								.	.																																										.	.	.	.																	.	.
Query SS confidence								.	.																																										.	.	.	.																	.	.
Query Sequence	Q	V	T	Q	Q	H	N	.	.	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	.	.	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	.	.	L	Q	F	A	R	H	L	I
Query Conservation								.	.																																										.	.	.	.																	.	.
Alig confidence								.	.																		.	.	.	.	.	.																			.	.	.	.																	.	.
Template Conservation																											.	.	.	.	.	.
Template Sequence	K	S	I	R	E	V	N	E	N	V	I	V	F	V	D	N	C	Y	G	E	F	V	E	E	K	E	.	.	.	.	.	.	P	T	D	V	G	A	D	I	I	A	G	S	L	I	K	N	I	G	G	G	I	A	T	T	G	G	Y	I	A	G	K	E	E	Y	V	T	Q	A	T	F	R	V	T	V	P	G	I	G
Template Known Secondary structure								S	S	S							T	T	T	T	T	T	S	S	S		.	.	.	.	.	.	G	G	G	G	T		S						T	T	S	G	G	G	T	T	T			S																			S		T	T	T	G
Template Predicted Secondary structure																											.	.	.	.	.	.
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.							.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	S	A	.	.	.	.	.	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L
Query Conservation																																																									.	.	.	.	.
Alig confidence																						.	.	.	.	.																															.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence	G	E	C	G	S	T	F	G	V	X	R	S	L	Y	E	G	L	F	X	A	P	.	.	.	.	.	H	V	T	I	E	A	V	K	G	A	V	F	C	A	R	I	X	E	L	A	G	F	D	V	L	P	K	Y	N	D	K	R	T	D	I	I	Q	A	I	K	F	N	D	E	K	K	L	I	D	F	I	K	G	I
Template Known Secondary structure	G	G					T	T														.	.	.	.	.																					T					S		T	T	S			S	S	S								S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
	277	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.

	339	340
Predicted Secondary structure
Query SS confidence
Query Sequence	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence	Q	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	352	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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