Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 28 Aligned Residues 363 % Identity 16% Template c3hmuA_ PDB info PDB header:transferase Chain: A: PDB Molecule:aminotransferase, class iii; PDBTitle: crystal structure of a class iii aminotransferase from2 silicibacter pomeroyi Resolution 2.10 Å

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.												.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.				50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.
Query Sequence		N	A	A	L	D	A	R	R	A	A	D	A	L	R	R	.	.	.	.	.	.	.	.	.	.	.	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	N	D	Y	.	.	.	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.													.																.	.	.			.
Template Conservation																																																													.
Template Sequence		T	A	E	L	Q	A	L	D	A	A	H	H	L	H	P	F	S	A	N	N	A	L	G	E	E	G	T	R	V	I	T	R	A	R	G	V	W	L	N	D	S	E	G	E	E	I	L	D	A	M	A	G	L	W	C	V	N	I	G	.	Y	G	R	D	E	L	A	E	V	A	A	R	Q	M	R	E	L	P	Y	Y
Template Known Secondary structure																T	T	S																		B	T					T	T							T	T					T		T	T		.	B																	S
Template Predicted Secondary structure																																																													.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.		.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100			.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																														.	.																					.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.																					.	.	.	.	.	.	.	.	.
Query Sequence		S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	.	.	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	.	.	.	.	.	.	.	.	.	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S
Query Conservation																														.	.																					.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.																					.	.																					.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.
Template Sequence		N	T	F	F	K	.	.	.	T	T	H	V	P	A	I	A	L	A	Q	K	L	A	E	L	A	P	G	D	L	N	H	V	F	F	A	G	G	G	S	E	A	N	D	T	N	I	R	M	V	R	T	Y	W	Q	N	K	G	Q	P	E	K	T	V	I	I	S	R	K	N	A	Y	H	G	S	T	V	A	S	S	A
Template Known Secondary structure			S	S	S	S	.	.	.																	S		T	T								S	S																			T	T		T	T								T	T					S	S
Template Predicted Secondary structure							.	.	.
Template SS confidence
		89	90	.	.	.				.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		142	.																													.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.
Query Sequence		L	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	Q	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	.	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.																							.	.	.	.
Template Conservation
Template Sequence		L	G	G	M	A	G	M	H	A	Q	S	G	L	I	P	D	V	H	H	I	N	Q	P	N	W	W	A	E	G	G	D	M	D	P	E	E	F	G	L	A	R	A	R	E	L	E	E	A	I	L	E	L	G	E	N	R	V	A	A	F	I	A	E	P	V	Q	G	A	G	G	V	I	V	A	P	D	S	Y	W	P
Template Known Secondary structure			S								T	T				S	S														T	T																							G	G	G								S	S	B	S	T	T	T		B				T	T
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S
Query Conservation																																																					.
Alig confidence																						.																															.
Template Conservation																						.
Template Sequence		E	I	Q	R	I	C	D	K	Y	D	I	L	L	I	A	D	E	V	I	C	.	G	F	G	R	T	G	N	W	F	G	T	Q	T	M	G	I	R	P	H	I	M	T	I	A	K	G	L	S	S	G	Y	A	P	I	G	G	S	I	V	C	D	E	V	A	H	V	I	G	K	D	E	F	N	H	G	Y	T	Y	S
Template Known Secondary structure										T	T								T	T	T	.	T	T	T	T	T	S	S	S							T				S						G	G	G	T	T	T	S	S																T	T	S							T	T	T
Template Predicted Secondary structure																						.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.		.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		268	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.		.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.													.	.	.	.	330	.	.	.
Predicted Secondary structure																																.																.														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.																.														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	.	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	.	L	A	D	S	C	S	A	I	Q	P	L	I	V	.	.	.	.	.	.	.	.	.	.	.	.	G	D	N	S	R	A	L	Q
Query Conservation																																.																.														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																.																.														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	H	P	V	A	A	A	V	A	L	E	N	L	R	I	L	E	E	E	N	I	L	D	H	V	R	N	V	A	A	P	Y	L	K	E	K	W	E	A	L	T	D	H	P	L	V	G	E	A	K	I	V	G	M	M	A	S	I	A	L	T	P	N	K	A	S	R	A	K	F	A	S	E	P	G	T	I	G	Y	I
Template Known Secondary structure		T																		T	T								T											G	G	G	G	S	T	T								T	T								S		G	G	G	T			B	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		325	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence																		.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.
Template Sequence		C	R	E	R	C	F	A	N	N	L	I	M	R	H	V	G	.	.	.	.	.	.	.	.	D	R	M	I	I	S	P	P	L	V	I	T	P	A	E	I	D	E	M	F	V	R	I	R	K	S
Template Known Secondary structure									T	T	B						T	.	.	.	.	.	.	.	.	T								T	T
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.
Template SS confidence
		405	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420									.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.