Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 122 Aligned Residues 333 % Identity 15% Template c3h7fB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase 1; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 mycobacterium tuberculosis Resolution 1.50 Å

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		39	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.				.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure							.																								.																	.	.	.																					.
Query SS confidence							.																								.																	.	.	.																					.
Query Sequence		R	Q	Y	L	N	.	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	.	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	.	.	.	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	.	L	L	F	I	S	G	F	A	A	N
Query Conservation							.																								.																	.	.	.																					.
Alig confidence							.									.	.	.	.												.																	.	.	.																					.
Template Conservation																.	.	.	.
Template Sequence		R	D	T	L	E	M	I	A	S	E	N	F	V	P	.	.	.	.	R	A	V	L	Q	A	Q	G	S	V	L	T	N	K	Y	A	E	G	L	P	G	R	R	Y	Y	G	G	C	E	H	V	D	V	V	E	N	L	A	R	D	R	A	K	A	L	F	G	A	E	F	A	N	V	Q	P	H	S	G	A	Q	A	N
Template Known Secondary structure				S					T	T						.	.	.	.								T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure																.	.	.	.
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.					.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.						.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.							.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.
Predicted Secondary structure																									.	.	.	.	.																			.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.																			.	.	.	.	.	.
Query Sequence		Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	.	.	.	.	.	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	.	.	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D
Query Conservation																									.	.	.	.	.																			.	.	.	.	.	.
Alig confidence																									.	.	.	.	.																			.	.	.	.	.	.																					.	.	.	.
Template Conservation																																																																										.	.	.	.
Template Sequence		A	A	V	L	H	A	L	M	S	P	G	E	R	L	L	G	L	D	L	A	N	G	G	H	L	T	H	G	M	R	L	N	F	S	G	K	L	Y	E	N	G	F	Y	G	V	D	P	A	T	H	L	I	D	M	D	A	V	R	A	T	A	L	E	F	R	P	K	V	I	I	A	G	.	.	.	.	W	S	A	Y
Template Known Secondary structure											T	T								G	G	G	T			G	G	G	T		T	T	S					S	S									T	T	T		S																S						.	.	.	.		S	S
Template Predicted Secondary structure																																																																										.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.					.	.	.	.
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	S	A	P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H
Query Conservation
Alig confidence																																												.	.	.
Template Conservation																																												.	.	.
Template Sequence		P	R	V	L	D	F	A	A	F	R	S	I	A	D	E	V	G	A	K	L	L	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	S	P	V	P	H	.	.	.	A	D	V	V	S	T	T	V	H	T	L	G	G	G	R	S	G	L	I	V	G	K	Q	Q	Y	A	K	A	I	N	S	A	V	F	P
Template Known Secondary structure			S															T								T	T	T						T	T	S	S			S	T	T	T	.	.	.		S													S								G	G	G									T	T
Template Predicted Secondary structure																																												.	.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.				.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.
		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.						.	.	.	310	.	.	.	.	.	.			.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.
Predicted Secondary structure																																															.	.	.	.	.											.	.										.
Query SS confidence																																															.	.	.	.	.											.	.										.
Query Sequence		L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	.	.	.	.	.	Q	D	L	P	F	T	L	A	D	S	.	.	C	S	A	I	Q	P	L	I	V	.	G	D	N	S	R	A	L	Q
Query Conservation																																															.	.	.	.	.											.	.										.
Alig confidence									.																																						.	.	.	.	.											.	.										.
Template Conservation									.
Template Sequence		G	Q	Q	G	G	P	L	.	M	H	V	I	A	G	K	A	V	A	L	K	I	A	A	T	P	E	F	A	D	R	Q	R	R	T	L	S	G	A	R	I	I	A	D	R	L	M	A	P	D	V	A	K	A	G	V	S	V	V	S	G	G	T	D	V	H	L	V	L	V	D	L	R	D	S	P	L	D	G	Q	A
Template Known Secondary structure		T	T		S	S			.															T	S																						S	S						T	T				G	G	G	S		S	S	S							T	T	S	S
Template Predicted Secondary structure									.
Template SS confidence
		254	.	.	.	.	.	260		.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.				.	.	.	.	.	.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																				.	.	.															.	.	.	.
Query SS confidence																				.	.	.															.	.	.	.
Query Sequence		L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	.	.	.	T	V	P	A	G	T	A	R	L	R	L	T	L	T	.	.	.	.	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation																				.	.	.															.	.	.	.
Alig confidence																				.	.	.															.	.	.	.
Template Conservation
Template Sequence		A	E	D	L	L	H	E	V	G	I	T	V	N	R	N	A	V	P	N	D	P	R	P	P	M	V	T	S	G	L	R	I	G	T	P	A	L	A	T	R	G	F	G	D	T	E	F	T	E	V	A	D	I	I	A	T	A
Template Known Secondary structure									T	T									T	T		S	S		T	T	T		S													T
Template Predicted Secondary structure
Template SS confidence
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions