Phyre 2 alignment of P12998 with c3gwpA

Job Description P12998
Confidence 99.89% Date Wed Jan 25 15:20:38 GMT 2012

Rank 235 Aligned Residues 274

% Identity 12% Template c3gwpA_

PDB info PDB header:lyase Chain: A: PDB Molecule:carbon-sulfur lyase involved in aluminum resistance; PDBTitle: crystal structure of carbon-sulfur lyase involved in aluminum2 resistance (yp_878183.1) from clostridium novyi nt at 2.90 a3 resolution

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.		.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.				.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
Predicted Secondary structure																															.																				.	.	.
Query SS confidence																															.																				.	.	.
Query Sequence	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	.	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	.	.	.	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L
Query Conservation																															.																				.	.	.
Alig confidence										.	.																				.																				.	.	.
Template Conservation										.	.
Template Sequence	L	K	V	L	N	A	F	Q	E	.	.	E	R	I	S	E	A	H	F	T	N	S	S	G	Y	G	Y	G	D	I	G	R	D	S	L	D	A	V	Y	A	R	V	F	N	T	E	S	A	L	V	R	P	H	F	V	N	G	T	H	A	L	G	A	A	L	F	G	N	L	R	P	G	N	T	X	L	S	V	C	G
Template Known Secondary structure										.	.	T	T			G	G	G	S					T	T		T	T															T	T		S					B	T	T			S															T	T						S	S	S
Template Predicted Secondary structure										.	.
Template SS confidence
	45	.	.	.	.	50	.	.	.			.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

	132	.	.	.	.	.	.	.	140	.	.	.													.	.	.	.	.	.	150	.	.	.	.	.	.			.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.							.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.	.	.	.	.	.
Query Sequence	S	H	A	S	L	L	E	A	A	S	L	S	.	.	.	.	.	.	.	.	.	.	.	.	P	S	Q	L	R	R	F	A	H	N	D	V	T	.	.	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	.	.	.	.	.	.	V	F	S	M	D	G	D	S	A	P	L	A	E	I	Q
Query Conservation													.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.	.	.	.	.	.	.														.	.																					.	.	.	.	.	.
Template Conservation
Template Sequence	E	P	Y	D	T	L	H	D	V	I	G	I	T	E	N	S	N	X	G	S	L	K	E	F	G	I	N	Y	K	Q	V	D	L	K	E	D	G	K	P	N	L	E	E	I	E	K	V	L	K	E	D	E	S	I	T	L	V	H	I	Q	R	S	T	G	Y	G	W	R	R	A	L	L	I	E	D	I	K	S	I	V
Template Known Secondary structure	S			T	T						T	S	S				T	T			T	G	G	G	T								B		T	T	S	S	B													T	T									S		T	T		S	S
Template Predicted Secondary structure
Template SS confidence
	123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.

	192	.	.	.	.	.	.			.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.				240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.			.	.	.	.	260	.	.	.	.
Predicted Secondary structure								.	.																																										.	.	.																	.	.
Query SS confidence								.	.																																										.	.	.																	.	.
Query Sequence	Q	V	T	Q	Q	H	N	.	.	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	.	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	.	.	L	Q	F	A	R	H	L	I	Y
Query Conservation								.	.																																										.	.	.																	.	.
Alig confidence								.	.																				.	.	.	.	.	.																	.	.	.																	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence	D	C	V	K	N	I	R	K	D	I	I	C	F	V	D	N	C	Y	G	E	F	X	D	T	K	E	P	T	.	.	.	.	.	.	D	V	G	A	D	L	I	A	G	S	L	I	N	I	G	G	G	I	A	P	T	G	G	Y	L	A	G	T	K	D	C	I	E	K	T	S	Y	R	L	T	V	P	G	I	G	G
Template Known Secondary structure								T	T	S							T	T		T	T	S	S	S	S		G	G	.	.	.	.	.	.	G	G	T		S									T	T	T	T	T			S																			S		T	T	T	G	G
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
	203	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230							.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.

	265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.						.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	.	.	.	.	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R
Query Conservation																																																						.	.	.	.	.
Alig confidence																					.	.	.	.	.																													.	.	.	.	.
Template Conservation																					.	.	.	.	.
Template Sequence	E	C	G	S	T	F	G	V	V	R	S	X	Y	Q	G	L	F	L	A	P	.	.	.	.	.	H	I	S	X	E	A	L	K	G	A	I	L	C	S	R	I	X	E	L	A	G	F	E	V	X	P	K	Y	D	E	K	R	S	D	I	I	Q	S	I	K	F	N	D	K	D	K	L	I	E	F	C	K	G	I	Q
Template Known Secondary structure	G	S				T	T														.	.	.	.	.																				T	T					S		T	T	S			S	S	S							S	S
Template Predicted Secondary structure																					.	.	.	.	.
Template SS confidence
	278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.						.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

	340	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	Q	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	G	S
Template Known Secondary structure		T
Template Predicted Secondary structure
Template SS confidence
	353	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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