Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 26 Aligned Residues 366 % Identity 18% Template c3fcrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.														20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.
Query Sequence		N	A	A	L	D	A	R	R	A	A	D	A	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																.													.	.	.						.
Template Conservation																																																															.
Template Sequence		N	D	Q	L	D	Q	W	D	R	D	N	F	F	H	P	S	T	H	L	A	Q	H	A	R	G	E	S	A	N	R	V	I	K	T	A	S	G	V	F	I	E	D	R	D	G	T	K	L	L	D	A	F	A	G	L	Y	C	V	N	V	G	.	Y	G	R	Q	E	I	A	E	A	I	A	D	Q	A	R	E	L	A
Template Known Secondary structure																S	S	S								T		S										B	T					T	T							T	T					T			S		.	B																	S
Template Predicted Secondary structure																																																															.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.		.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120										.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.																								.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.																								.	.	.	.	.	.	.	.	.
Query Sequence		I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	.	.	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A	A	M	M	.	.	.	.	.	.	.	.	.	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A
Query Conservation																													.	.																								.	.	.	.	.	.	.	.	.
Alig confidence				.	.	.																							.	.																								.	.	.	.	.	.	.	.	.
Template Conservation				.	.	.
Template Sequence		Y	Y	.	.	.	H	S	Y	V	G	H	G	T	E	A	S	I	T	L	A	K	X	I	L	D	R	A	P	K	N	X	S	K	V	Y	F	G	L	G	G	S	D	A	N	E	T	N	V	K	L	I	W	Y	Y	N	N	I	L	G	R	P	E	K	K	K	I	I	S	R	W	R	G	Y	H	G	S	G	L	V	T
Template Known Secondary structure				.	.	.				T	T																	S		T	T								S	S																			T	T		T	T								T	T					S	S
Template Predicted Secondary structure				.	.	.
Template SS confidence
		83	.				.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		140	.	.	.	.	.	.	.	.	.	150	.	.	.	.																															.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																				.	.
Query SS confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																				.	.
Query Sequence		A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	T	H	L	A	R	L	L	A	S	P	C	P	.	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.
Query Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																				.	.
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.																				.	.
Template Conservation
Template Sequence		G	S	L	T	G	L	E	L	F	H	K	K	F	D	L	P	V	E	Q	V	I	H	T	E	A	P	Y	Y	F	R	R	E	D	L	N	Q	T	E	E	Q	F	V	A	H	C	V	A	E	L	E	A	L	I	E	R	E	G	A	D	T	I	A	A	F	I	G	E	P	I	L	G	T	G	G	I	V	P	P	P	A
Template Known Secondary structure					S			G	G	G	T	T	T	T	T		S		T	T							S		G	G	G		S		T	T																							G	G	G								S	S	B	S	T	T	T		B				T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
				187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																						.																				.	.	.	.	.
Query SS confidence		.	.																																																						.																				.	.	.	.	.
Query Sequence		.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	.	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	.	.	.	.	.
Query Conservation		.	.																																																						.																				.	.	.	.	.
Alig confidence		.	.																							.																															.																				.	.	.	.	.
Template Conservation																										.
Template Sequence		G	Y	W	E	A	I	Q	T	V	L	N	K	H	D	I	L	L	V	A	D	E	V	V	T	.	G	F	G	R	L	G	T	X	F	G	S	D	H	Y	G	L	E	P	D	I	I	T	I	A	K	G	L	T	S	A	Y	A	P	L	S	G	S	I	V	S	D	K	V	W	K	V	L	E	Q	G	T	D	E	N	G
Template Known Secondary structure		T													T								T	T	T	.	S	S	S	T	T	S	S	S							T				S						G	G	G	T	T	T	S	S
Template Predicted Secondary structure																										.
Template SS confidence
		240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.		.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.		.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure																											.																														.														.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.																														.														.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	.	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	.	L	A	D	S	C	S	A	I	Q	P	L	I	V	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																											.																														.														.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.																														.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	I	G	H	G	W	T	Y	S	A	H	P	I	G	A	A	A	G	V	A	N	L	K	L	L	D	E	L	N	L	V	S	N	A	G	E	V	G	A	Y	L	N	A	T	X	A	E	A	L	S	Q	H	A	N	V	G	D	V	R	G	E	G	L	L	C	A	V	E	F	V	K	D	R	D	S	R	T	F	F	D
Template Known Secondary structure		S		S				T	T	T	T																		T	T																					T	T	S	T	T							S	S	S								S	B	T	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		326	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence																										.	.	.	.	.
Template Conservation																										.	.	.	.	.
Template Sequence		A	A	D	K	I	G	P	Q	I	S	A	K	L	L	E	Q	D	K	I	I	A	R	A	X	.	.	.	.	.	P	Q	G	D	I	L	G	F	A	P	P	F	C	L	T	R	A	E	A	D	Q	V	V	E	G	T	L	R	A
Template Known Secondary structure		G	G	G																						.	.	.	.	.	S	S	S	S								T	T
Template Predicted Secondary structure																										.	.	.	.	.
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.						.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.