Phyre 2 alignment of P12998 with c3eleB

Job Description P12998
Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012

Rank 118 Aligned Residues 335

% Identity 10% Template c3eleB_

PDB info PDB header:transferase Chain: B: PDB Molecule:amino transferase; PDBTitle: crystal structure of amino transferase (rer070207001803) from2 eubacterium rectale at 2.10 a resolution

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	41	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
Predicted Secondary structure																																	.																												.	.	.	.
Query SS confidence																																	.																												.	.	.	.
Query Sequence	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	.	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	.	.	.	.	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V
Query Conservation																																	.																												.	.	.	.
Alig confidence										.																							.																												.	.	.	.
Template Conservation										.
Template Sequence	V	Y	D	F	S	I	G	N	P	.	S	I	P	A	P	Q	I	V	N	D	T	I	K	E	L	V	T	D	Y	D	S	V	A	L	H	G	Y	T	S	A	Q	G	D	V	E	T	R	A	A	I	A	E	F	L	N	N	T	H	G	T	H	F	N	A	D	N	L	Y	X	T	X	G	A	A	A	S	L	S	I	C
Template Known Secondary structure										.		S																	S							S				T	T																							G	G	G					S	S
Template Predicted Secondary structure										.
Template SS confidence
	36	.	.	.	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.

	116	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.
Predicted Secondary structure									.																																.	.	.																																	.	.	.
Query SS confidence									.																																.	.	.																																	.	.	.
Query Sequence	I	A	A	M	M	A	K	E	.	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	.	.	.	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	L	A
Query Conservation									.																																.	.	.																																	.	.	.
Alig confidence									.																																.	.	.																																	.	.	.
Template Conservation
Template Sequence	F	R	A	L	T	S	D	A	Y	D	E	F	I	T	I	A	P	Y	F	P	E	Y	K	V	F	V	N	A	A	G	A	R	L	V	E	V	P	A	D	T	E	H	F	Q	I	D	F	D	A	L	E	E	R	I	N	A	H	T	R	G	V	I	I	N	S	P	N	N	P	S	G	T	V	Y	S	E	E	T	I	K
Template Known Secondary structure							S	T	T							S	S			T	T								T	T										T	T	T	S	S									T			T	T								S	S		T	T	T
Template Predicted Secondary structure
Template SS confidence
	115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.

	189	190	.	.	.	.	.	.	.	.							.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.				.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.																																													.	.	.
Query SS confidence											.	.	.	.	.	.																																													.	.	.
Query Sequence	E	I	Q	Q	V	T	Q	Q	H	N	.	.	.	.	.	.	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	.	.	.	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A
Query Conservation											.	.	.	.	.	.																																													.	.	.
Alig confidence											.	.	.	.	.	.																											.																		.	.	.
Template Conservation																																											.
Template Sequence	K	L	S	D	L	L	E	K	K	S	K	E	I	G	R	P	I	F	I	I	A	D	E	P	Y	R	E	I	V	Y	D	G	I	K	V	P	F	V	T	K	Y	Y	.	D	N	T	L	V	C	Y	S	Y	S	K	S	L	S	L	P	G	E	R	I	G	Y	V	L	V	P	D	E	V	Y	D	K	A	E	L	Y	A
Template Known Secondary structure														T	S									T	T	T	T		B		T	T						G	G	G	T		.	S	S							S	T	T	T	S	S		G	G	G									T	T	S	T	T
Template Predicted Secondary structure																																											.
Template SS confidence
	195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.

	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R
Query Conservation
Alig confidence																					.
Template Conservation																					.
Template Sequence	A	V	C	G	A	G	R	A	L	G	Y	V	C	A	P	S	L	F	Q	K	.	X	I	V	K	C	Q	G	A	T	G	D	I	N	A	Y	K	E	N	R	D	L	L	Y	E	G	L	T	R	I	G	Y	H	C	F	K	P	D	G	A	F	Y	X	F	V	K	A	L	E	D	D	S	N	A	F	C	E	K	A	K
Template Known Secondary structure									T	T				S							.			T	T		T	T																							T							S	B	S	S							S	S	S
Template Predicted Secondary structure																					.
Template SS confidence
	274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.		.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation
Alig confidence													.	.	.												.	.
Template Conservation													.	.	.												.	.
Template Sequence	E	E	D	V	L	I	V	A	A	D	G	F	.	.	.	G	C	P	G	W	V	R	I	S	Y	C	.	.	V	D	R	E	X	I	K	H	S	X	P	A	F	E	K	I
Template Known Secondary structure		T	T						G	G	G	G	.	.	.	T		T	T								.	.	S
Template Predicted Secondary structure													.	.	.												.	.
Template SS confidence
	353	.	.	.	.	.	.	360	.	.	.	.				.	.	.	.	.	370	.	.	.	.	.			.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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