Job Description P12998 Confidence 99.97% Date Wed Jan 25 15:20:38 GMT 2012 Rank 153 Aligned Residues 313 % Identity 18% Template c3ecdC_ PDB info PDB header:transferase Chain: C: PDB Molecule:serine hydroxymethyltransferase 2; PDBTitle: crystal structure of serine hydroxymethyltransferase from burkholderia2 pseudomallei Resolution 1.60 Å

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		39	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.		.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure									.																																																												.
Query SS confidence									.																																																												.
Query Sequence		R	Q	Y	L	N	F	S	.	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	.	F	I	S	G	F	A	A	N	Q	A	V	I
Query Conservation									.																																																												.
Alig confidence									.							.	.	.	.								.	.	.	.	.	.	.	.																																			.
Template Conservation																.	.	.	.								.	.	.	.	.	.	.	.
Template Sequence		Q	S	Q	V	E	L	I	A	S	E	N	I	V	S	.	.	.	.	R	A	V	L	D	A	Q	.	.	.	.	.	.	.	.	G	S	V	L	T	N	K	Y	A	E	G	Y	D	E	V	E	A	L	A	I	E	R	V	K	R	L	F	N	A	G	H	A	N	V	Q	P	H	S	G	A	Q	A	N	G	A	V	M
Template Known Secondary structure				S					T	T						.	.	.	.								.	.	.	.	.	.	.	.	T	S	G	G	G	S	S		T	T																	T	T		S							S	S
Template Predicted Secondary structure																.	.	.	.								.	.	.	.	.	.	.	.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.					.	.	.	.	.	50	.									.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	L	A	E	I	Q	Q	V	T	Q	Q
Query Conservation
Alig confidence																														.	.	.	.	.	.	.																	.	.								.	.
Template Conservation																														.	.	.	.	.	.	.																	.	.								.	.
Template Sequence		L	A	L	A	K	P	G	D	T	V	L	G	M	S	L	F	N	A	L	Q	Y	G	V	S	R	D	T	M	.	.	.	.	.	.	.	L	I	D	Y	D	Q	V	E	A	L	A	Q	Q	H	K	P	.	.	S	L	I	I	A	G	F	.	.	S	A	Y	P	R	K	L	D	F	A	R	F	R	A	I	A	D	S
Template Known Secondary structure							T	T																B		T	T	T		.	.	.	.	.	.	.	S	B															.	.	S							.	.	S			S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.																	.	.								.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.								.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
		197	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence		H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	.	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	S	M	P	P	A	Q	A	Q	A
Query Conservation																																												.
Alig confidence																												.	.	.														.																				.	.	.	.	.	.
Template Conservation																												.	.	.																																		.	.	.	.	.	.
Template Sequence		V	G	A	K	L	M	V	D	M	A	H	I	A	G	V	I	A	A	G	R	H	A	N	P	V	E	.	.	.	H	A	H	V	V	T	S	T	T	H	K	T	L	R	G	P	R	G	G	F	V	L	T	N	D	E	E	I	A	K	K	I	N	.	.	.	.	.	.	S	A	V	G	P	L	M	H	V	I	A	G
Template Known Secondary structure		T	T								T	T	T						T	T	S	S			G	G	G	.	.	.	T		S						S	S	G	G	G		S		S							S										.	.	.	.	.	.
Template Predicted Secondary structure																												.	.	.																																		.	.	.	.	.	.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.				.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.							.	.	.	260	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.			.	.	.	.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure																																									.	.												.
Query SS confidence																																									.	.												.
Query Sequence		L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	.	.	D	S	C	S	A	I	Q	P	L	I	V	.	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T
Query Conservation																																									.	.												.
Alig confidence																																									.	.												.
Template Conservation
Template Sequence		K	A	V	A	F	G	E	A	L	T	D	D	F	K	T	Y	I	D	R	V	L	A	N	A	Q	A	L	G	D	V	L	K	A	G	G	V	D	L	V	T	G	G	T	D	N	H	L	L	L	V	D	L	R	P	K	G	L	K	G	A	Q	V	E	Q	A	L	E	R	A	G	I	T	C	N	K	N	G	I	P	F
Template Known Secondary structure										T	S																								T	T				G	G	G	S		S	S	S							G	G	G	T													T	T									T	T
Template Predicted Secondary structure
Template SS confidence
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
					353	.	.	.	.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure		.	.	.														.	.	.	.
Query SS confidence		.	.	.														.	.	.	.
Query Sequence		.	.	.	V	P	A	G	T	A	R	L	R	L	T	L	T	.	.	.	.	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation		.	.	.														.	.	.	.
Alig confidence		.	.	.														.	.	.	.
Template Conservation
Template Sequence		D	P	E	K	P	T	I	T	S	G	I	R	L	G	T	P	A	G	T	T	R	G	F	G	A	A	E	F	R	E	V	G	R	L	I	L	E	V
Template Known Secondary structure			S	S		T	T	T		S												T	T
Template Predicted Secondary structure
Template SS confidence
		355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions