Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 54 Aligned Residues 337 % Identity 13% Template c3caiA_ PDB info PDB header:transferase Chain: A: PDB Molecule:possible aminotransferase; PDBTitle: crystal structure of mycobacterium tuberculosis rv3778c2 protein Resolution 1.80 Å

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		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.		.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.			100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																																												.																						.	.
Query SS confidence																																												.																						.	.
Query Sequence		D	D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	.	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	.	.	S	R	A	L	L	F	I	S	G	F	A	A	N	Q
Query Conservation																																												.																						.	.
Alig confidence															.	.	.	.																										.																						.	.
Template Conservation															.	.	.	.
Template Sequence		D	G	W	V	H	F	D	A	P	A	G	M	L	.	.	.	.	I	P	D	S	V	A	T	T	V	S	T	A	F	R	R	S	G	A	S	T	V	G	A	H	P	S	A	R	R	S	A	A	V	L	D	A	A	R	E	A	V	A	D	L	V	N	A	D	P	G	G	V	V	L	G	A	D	R	A	V	L	L	S
Template Known Secondary structure		S	S					B	G	G	G				.	.	.	.																		S	S	S		S	S	S																						T			G	G	G					S
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
		114	.	.	.	.	.				120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.					.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.				.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure								.	.	.																	.	.	.	.																						.	.	.
Query SS confidence								.	.	.																	.	.	.	.																						.	.	.
Query Sequence		A	V	I	A	A	M	.	.	.	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	.	.	.	.	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	.	.	.	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D
Query Conservation								.	.	.																	.	.	.	.																						.	.	.
Alig confidence								.	.	.																	.	.	.	.																						.	.	.
Template Conservation
Template Sequence		L	L	A	E	A	S	S	S	R	A	G	L	G	Y	E	V	I	V	S	R	L	D	D	E	A	N	I	A	P	W	L	R	A	A	H	R	Y	G	A	K	V	K	W	A	E	V	D	I	E	T	G	E	L	P	T	W	Q	W	E	S	L	I	S	K	S	T	R	L	V	A	V	N	S	A	S	G	T	L	G	G
Template Known Secondary structure							T	G	G	G	G	B	T	T							T	T	S		G	G	G	T											B										T	T	T					G	G	G							T	T								S	B		T	T	T		B
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	A	P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I
Query Conservation
Alig confidence																																		.	.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.
Template Sequence		V	T	D	L	R	A	M	T	K	L	V	H	D	V	G	A	L	V	V	V	D	H	S	A	A	A	P	Y	R	L	L	D	.	.	.	.	.	.	I	R	E	T	D	A	D	V	V	T	V	N	A	H	A	W	G	G	P	P	I	G	A	M	V	F	R	D	P	S	V	M	N	S	F	G	S	V	S	T	N	P
Template Known Secondary structure		B													T	T								T	T	T	T	T	T					.	.	.	.	.	.							S						G	G	G	G	T	S		S							S							T	S					S		T
Template Predicted Secondary structure																																		.	.	.	.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.							.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		264	.																							.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Query Sequence		Y	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	.	.	.
Query Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																					.	.	.	.
Template Conservation
Template Sequence		Y	A	T	G	P	A	R	L	E	I	G	V	H	Q	F	G	L	L	A	G	V	V	A	S	I	E	Y	L	A	A	L	D	E	S	A	R	G	S	R	R	E	R	L	A	V	S	M	Q	S	A	D	A	Y	L	N	R	V	F	D	Y	L	M	V	S	L	R	S	L	P	L	V	M	L	I	G	R	P	E	A	Q
Template Known Secondary structure		T			G	G	G	G	G			S																			T	S	S	T	T			S	S																													T		T	T								S	S	B
Template Predicted Secondary structure
Template SS confidence
		247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.							.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.
Predicted Secondary structure																																				.	.	.	.	.	.
Query SS confidence																																				.	.	.	.	.	.
Query Sequence		S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	.	.	.	.	.	.	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N	G
Query Conservation																																				.	.	.	.	.	.
Alig confidence											.																									.	.	.	.	.	.
Template Conservation											.
Template Sequence		I	P	V	V	S	F	A	V	H	.	K	V	P	A	D	R	V	V	Q	R	L	A	D	N	G	I	L	A	I	A	N	T	G	S	R	V	L	D	V	L	G	V	N	D	V	G	G	A	V	T	V	G	L	A	H	Y	S	T	M	A	E	V	D	Q	L	V	R	A	L	A	S	L	G
Template Known Secondary structure			S							T	.	T	B												T	T								S								T	T	T	T	T	T									T	T															T
Template Predicted Secondary structure											.
Template SS confidence
		327	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions