Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 48 Aligned Residues 325 % Identity 14% Template c3bcxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:cdp-6-deoxy-l-threo-d-glycero-4-hexulose-3- PDBTitle: e1 dehydrase Resolution 2.40 Å

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		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	Q	Y	L	N	F	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	A
Query Conservation
Alig confidence														.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template Sequence		G	K	S	V	V	P	P	S	G	K	V	I	.	.	.	.	.	G	T	K	E	L	Q	L	M	V	E	A	S	L	D	G	W	L	T	T	G	.	.	.	.	.	.	.	.	.	R	F	N	D	A	F	E	K	K	L	G	E	Y	L	G	V	P	Y	V	L	T	T	T	S	G	S	S	A	N	L	L	A	L	T
Template Known Secondary structure		T	T	S		B		S						.	.	.	.	.															T			B	S		.	.	.	.	.	.	.	.	.															T		S						S
Template Predicted Secondary structure														.	.	.	.	.																					.	.	.	.	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.						.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.										.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.
		118	.										120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.				.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.	.	.																																				.	.	.
Query SS confidence				.	.	.	.	.	.	.	.	.																																				.	.	.
Query Sequence		A	M	.	.	.	.	.	.	.	.	.	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	D	.	.	.	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A
Query Conservation				.	.	.	.	.	.	.	.	.																																				.	.	.
Alig confidence				.	.	.	.	.	.	.	.	.																																				.	.	.																						.	.	.
Template Conservation																																																																								.	.	.
Template Sequence		A	L	T	S	P	K	L	G	V	R	A	L	K	P	G	D	E	V	I	T	V	A	A	G	F	P	T	T	V	N	P	T	I	Q	N	G	L	I	P	V	F	V	D	V	D	I	P	T	Y	N	V	N	A	S	L	I	E	A	A	V	S	D	K	T	K	A	I	M	I	A	.	.	.	H	T	L	G	N	L	F
Template Known Secondary structure			T	T		G	G	G	G	G	G	S			T	T							S	S	S											T	T								B		T	T	T		S	B		G	G	G							S	S								.	.	.		G	G	G
Template Predicted Secondary structure																																																																								.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.				.	.	.	.	170	.	.
		186	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																										.																							.
Query SS confidence																																																										.																							.
Query Sequence		P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	G	V	S	.	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	.
Query Conservation																																																										.																							.
Alig confidence																																							.	.	.																	.																							.
Template Conservation																																							.	.	.
Template Sequence		D	L	A	E	V	R	R	V	A	D	K	Y	N	L	W	L	I	E	D	C	C	D	A	L	G	S	T	Y	D	G	K	M	A	G	T	F	G	.	.	.	D	I	G	T	V	S	F	Y	P	A	H	H	I	T	M	G	E	G	G	A	V	F	T	Q	S	A	E	L	K	S	I	I	E	S	F	R	D	W	G	R
Template Known Secondary structure														T								T	T		T	T				T	T			T	T	S	S	S	.	.	.	S							S	T	T	S	S	S			S	S							S													B	T	T	B
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.				210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
																			264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																																							.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	C	Y	C	L	G	S	L	P	F	G	Y	D	H	K	Y	T	Y	S	H	L	G	Y	N	L	K	I	T	D	M	Q	A	A	C	G	L	A	Q	L	E	R	I	E	E	F	V	E	K	R	K	A	N	F	K	Y	L	K	D	A	L	Q	S	C	A	D	F	I	E	L	P	E	A	T	E	N	S	D	P	S	W
Template Known Secondary structure											T	T			G	G	G		B		S				B				B																																G	G	G	G	T	T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
			318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.																						.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	S	A	I	Q	P	L	I	V	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R
Query Conservation		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	F	P	I	T	L	K	E	D	S	G	V	S	R	I	D	L	V	K	F	L	D	E	A	K	V	G	T	R	L	L	F	A	G	N	L	T	R	Q	P	Y	F	H	D	V	K	Y	R	V	V	G	E	L	T	N	T	D	R	I	M	N	Q	T	F	W	I	G	I	Y	P	G	L	T	H	D	H	L	D	Y
Template Known Secondary structure		S	S							G	G	G	S	S												T	T	B			B			T	T	S	S	G	G	G	S	G	G	G	T	T							S																		S	T	T
Template Predicted Secondary structure
Template SS confidence
		345	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.
		376	.	.	.	380	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	E	V	L	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	V	S	K	F	E	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		425	.	.	.	.	430	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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