Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 30 Aligned Residues 344 % Identity 18% Template c2zsmA_ PDB info PDB header:isomerase Chain: A: PDB Molecule:glutamate-1-semialdehyde 2,1-aminomutase; PDBTitle: crystal structure of glutamate-1-semialdehyde 2,1-2 aminomutase from aeropyrum pernix, hexagonal form Resolution 2.30 Å

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		21	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.				.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure																.													.	.	.
Query SS confidence																.													.	.	.
Query Sequence		R	R	R	Y	P	V	A	Q	G	A	G	R	W	L	.	V	A	D	D	R	Q	Y	L	N	F	S	S	.	.	.	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W
Query Conservation																.													.	.	.
Alig confidence																.													.	.	.						.																							.	.	.	.	.	.	.
Template Conservation																																					.																							.	.	.	.	.	.	.
Template Sequence		P	Y	P	F	Y	V	K	R	G	E	G	A	Y	L	Y	T	V	D	G	A	R	I	V	D	L	V	L	A	Y	G	P	L	I	L	G	.	H	K	H	P	R	V	L	E	A	V	E	E	A	L	A	R	G	W	L	Y	G	A	.	.	.	.	.	.	.	P	G	E	A	E	V	L	L	A	E	K	I	L	G	Y
Template Known Secondary structure		S	S									B	T					T	T							S	S	G	G	G	T	T		T	T		.	B	S													T	T		S			S	S	.	.	.	.	.	.	.			S
Template Predicted Secondary structure																																					.																							.	.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.		.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.								.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		97		.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.				.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure			.																				.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence			.																				.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	.	G	Y	S	R	A	L	L	F	I	S	G	F	A	A	N	Q	A	V	I	.	.	.	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	L	S	P	S	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	R	F	A	H	N	D	V	T	H	L	A
Query Conservation			.																				.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence			.																				.	.	.																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	K	R	G	G	M	I	R	F	V	N	S	G	T	E	A	T	M	T	A	I	R	L	A	R	G	Y	T	G	R	D	L	I	L	K	F	D	G	C	Y	H	G	S	H	D	A	V	L	V	A	A	G	G	V	P	T	S	A	G	V	P	E	A	V	A	R	L	T	L	V	T	P	Y	N	D	V	E	A	L	E
Template Known Secondary structure				T	T							S	S																										T					S	S	G	G	G	S								S	S	T	T							T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.
Query SS confidence																													.	.	.	.
Query Sequence		R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S	A	P	.	.	.	.	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G
Query Conservation																													.	.	.	.
Alig confidence																													.	.	.	.																													.	.
Template Conservation																																																													.	.
Template Sequence		R	V	F	A	E	Y	G	D	R	I	A	G	V	I	V	E	P	V	I	A	N	A	G	V	I	P	P	R	R	E	F	L	A	A	L	Q	R	L	S	R	E	S	G	A	L	L	I	L	D	E	V	V	T	G	F	R	L	G	L	.	.	E	G	A	Q	G	Y	F	N	I	E	G	D	I	I	V	L	G	K	I
Template Known Secondary structure								G	G	G								S	S	B		S	S	S		B																		T								T	T	T	T	T	T	S	S	T	.	.	T							T				S						G	G
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.			.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.		.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.
Predicted Secondary structure																																	.																							.																									.
Query SS confidence																																	.																							.																									.
Query Sequence		K	G	F	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I	Y	S	T	.	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	.	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	.
Query Conservation																																	.																							.																									.
Alig confidence																																	.																							.																									.
Template Conservation
Template Sequence		I	G	G	G	F	P	V	G	A	V	A	G	S	R	E	V	M	S	L	L	T	P	Q	G	K	V	F	N	A	G	T	F	N	A	H	P	I	T	M	A	A	G	L	A	T	L	K	A	L	E	E	E	P	V	Y	S	V	S	R	E	A	A	K	A	L	E	E	A	A	S	E	V	L	D	R	T	G	L	P	Y
Template Known Secondary structure		G	G	T	T	S	S												T	T	B	T	T	T	S	S	B					T	T	T	T																		S																						T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
		313	.	.	.	.	.	.	320	.	.	.	.	.	.														.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	A	D	S	C	S	A	I	Q	P	L	I	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q	Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	T	A	R	L	R	L	T	L	T	A	A	H	E	M	Q	D	I	D	R	L	L	E	V
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		T	I	N	R	V	E	S	M	M	Q	L	F	I	G	V	E	E	V	S	N	A	A	Q	A	R	K	A	D	K	K	F	Y	V	K	L	H	E	E	M	L	R	R	G	V	F	I	A	P	S	.	.	.	.	.	.	.	.	.	N	L	E	A	V	F	T	G	L	P	H	Q	G	E	A	L	E	I	A	V	E	G
Template Known Secondary structure							T	T							T		S			S	S					T	T	S															T	T					S	S	.	.	.	.	.	.	.	.	.	T	T	S						T	T		S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		353	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.										.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.
		380	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	R	S	S
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		424	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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