Job Description P12998 Confidence 20.12% Date Wed Jan 25 15:20:38 GMT 2012 Rank 367 Aligned Residues 154 % Identity 15% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.											.	.	.	.	.							.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Query SS confidence																																																	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Query Sequence		H	P	Q	I	I	R	A	W	Q	Q	G	A	E	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	.	.	.	.	.	.	.	.	.	.	A	L	L	F	I	.	.	.	.	.	.	S	G	F	A	A	N	Q	A	V	I	A	A
Query Conservation																																																	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Alig confidence																																																	.	.	.	.	.	.	.	.	.	.						.	.	.	.	.	.
Template Conservation
Template Sequence		N	L	E	V	A	R	D	F	V	E	R	V	R	E	E	A	L	G	K	Q	V	L	E	S	L	T	P	A	E	V	I	L	A	T	V	Y	E	A	L	K	E	A	L	G	G	E	A	R	L	P	V	L	K	D	R	N	L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K
Template Known Secondary structure																				T	T	T	T	T		S																		T	T	S	S								S	S									T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.						.	.	.	.	.	170	.	.	.	.	.	.	.				.	.	180	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.																								.	.	.	.	.														.	.	.
Query SS confidence																									.	.																								.	.	.	.	.														.	.	.
Query Sequence		M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	S	L	L	E	A	A	S	.	.	L	S	P	S	Q	L	R	R	F	A	H	N	D	V	T	H	L	A	R	L	L	A	S	.	.	.	.	.	P	C	P	G	Q	Q	M	V	V	T	E	G	V	.	.	.	F	S	M	D	G	D	S	A	P	L	A
Query Conservation																									.	.																								.	.	.	.	.														.	.	.
Alig confidence																									.	.																								.	.	.	.	.														.	.	.
Template Conservation
Template Sequence		G	K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A
Template Known Secondary structure			T	T										S	S																T								T	T																		T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G
Template Known Secondary structure										S								S	S	S
Template Predicted Secondary structure
Template SS confidence
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions