Job Description P12998 Confidence 100.00% Date Wed Jan 25 15:20:38 GMT 2012 Rank 55 Aligned Residues 337 % Identity 15% Template c2dkjB_ PDB info PDB header:transferase Chain: B: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of t.th.hb8 serine hydroxymethyltransferase Resolution 1.15 Å

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		39	40	.	.	.	.		.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.		.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.
Predicted Secondary structure								.																								.																	.	.	.																				.
Query SS confidence								.																								.																	.	.	.																				.
Query Sequence		R	Q	Y	L	N	F	.	S	S	N	D	Y	L	G	L	S	H	H	P	Q	I	I	R	A	W	Q	Q	G	A	E	.	Q	F	G	I	G	S	G	G	S	G	H	V	S	G	Y	S	.	.	.	V	V	H	Q	A	L	E	E	E	L	A	E	W	L	G	Y	S	R	A	.	L	L	F	I	S	G	F	A	A	N
Query Conservation								.																								.																	.	.	.																				.
Alig confidence								.						.	.	.	.															.																	.	.	.																				.
Template Conservation														.	.	.	.
Template Sequence		R	E	G	L	E	L	I	A	S	E	N	F	.	.	.	.	V	S	K	Q	V	R	E	A	V	G	S	V	L	T	N	K	Y	A	E	G	Y	P	G	A	R	Y	Y	G	G	C	E	V	I	D	R	V	E	S	L	A	I	E	R	A	K	A	L	F	G	A	A	W	A	N	V	Q	P	H	S	G	S	Q	A	N
Template Known Secondary structure				S					T	T				.	.	.	.										T	S	G	G	G	G							T	T			S	S	S																					T		S							S	S
Template Predicted Secondary structure														.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.					.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.				.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.						.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																								.	.	.																				.	.	.	.	.
Query SS confidence																								.	.	.																				.	.	.	.	.
Query Sequence		Q	A	V	I	A	A	M	M	A	K	E	D	R	I	A	A	D	R	L	S	H	A	.	.	.	S	L	L	E	A	A	S	L	S	P	S	Q	L	R	R	F	A	H	N	.	.	.	.	.	D	V	T	H	L	A	R	L	L	A	S	P	C	P	G	Q	Q	M	V	V	T	E	G	V	F	S	M	D	G	D	S
Query Conservation																								.	.	.																				.	.	.	.	.
Alig confidence																								.	.	.																				.	.	.	.	.																												.
Template Conservation																																																																														.
Template Sequence		M	A	V	Y	M	A	L	M	E	P	G	D	T	L	M	G	M	D	L	A	A	G	G	H	L	T	H	G	S	R	V	N	F	S	G	K	L	Y	K	V	V	S	Y	G	V	R	P	D	T	E	L	I	D	L	E	E	V	R	R	L	A	L	E	H	R	P	K	V	I	V	A	G	A	S	A	Y	.	P	R	F
Template Known Secondary structure											T	T								G	G	G	T			G	G	G	T		T	T	S						S									T	T	T		S																S							S	S		.		S
Template Predicted Secondary structure																																																																														.
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure																																																								.
Query SS confidence																																																								.
Query Sequence		A	P	L	A	E	I	Q	Q	V	T	Q	Q	H	N	G	W	L	M	V	D	D	A	H	G	T	G	V	I	G	E	Q	G	R	G	S	C	W	L	Q	K	V	K	P	E	L	L	V	V	T	F	G	K	G	F	.	G	V	S	G	A	A	V	L	C	S	S	T	V	A	D	Y	L	L	Q	F	A	R	H	L	I
Query Conservation																																																								.
Alig confidence																																							.	.	.															.
Template Conservation																																							.	.	.
Template Sequence		W	D	F	K	A	F	R	E	I	A	D	E	V	G	A	Y	L	V	V	D	M	A	H	F	A	G	L	V	A	A	G	L	H	P	N	P	L	.	.	.	P	Y	A	H	V	V	T	S	T	T	H	K	T	L	R	G	P	R	G	G	L	I	L	S	N	D	P	E	L	G	K	R	I	D	K	L	I	F	P	G
Template Known Secondary structure															T								T	T	T						T	T	S	S				T	.	.	.	T	T		S						S	S	G	G	G				S							S													T	T	T
Template Predicted Secondary structure																																							.	.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.				.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.			.	.	320	.	.	.	.	.		.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure																																																								.	.									.
Query SS confidence																																																								.	.									.
Query Sequence		Y	S	T	S	M	P	P	A	Q	A	Q	A	L	R	A	S	L	A	V	I	R	S	D	E	G	D	A	R	R	E	K	L	A	A	L	I	T	R	F	R	A	G	V	Q	D	L	P	F	T	L	A	D	S	C	.	.	S	A	I	Q	P	L	I	V	.	G	D	N	S	R	A	L	Q	L	A	E	K	L	R	Q
Query Conservation																																																								.	.									.
Alig confidence																																																								.	.									.
Template Conservation
Template Sequence		I	Q	G	G	P	L	E	H	V	I	A	G	K	A	V	A	F	F	E	A	L	Q	P	E	F	K	E	Y	S	R	L	V	V	E	N	A	K	R	L	A	E	E	L	A	R	R	G	Y	R	I	V	T	G	G	T	D	N	H	L	F	L	V	D	L	R	P	K	G	L	T	G	K	E	A	E	E	R	L	D	A
Template Known Secondary structure		T		S	S																	T	S																							T	T	T				G	G	G	S		S	S	S							G	G	G	T												T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.				.	.	.	360	.	.	.	.	.					.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																		.	.	.										.	.	.	.
Query SS confidence																		.	.	.										.	.	.	.
Query Sequence		Q	G	C	W	V	T	A	I	R	P	P	T	V	P	A	G	.	.	.	T	A	R	L	R	L	T	L	T	.	.	.	.	A	A	H	E	M	Q	D	I	D	R	L	L	E	V	L	H	G	N
Query Conservation																		.	.	.										.	.	.	.
Alig confidence																		.	.	.										.	.	.	.
Template Conservation
Template Sequence		V	G	I	T	V	N	K	N	A	I	P	F	D	P	K	P	P	R	V	T	S	G	I	R	I	G	T	P	A	I	T	T	R	G	F	T	P	E	E	M	P	L	V	A	E	L	I	D	R	A
Template Known Secondary structure		T	T									T	T			S		T	T	T		S												T	T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions